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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
2
differential activity
1
binding sites
histone modifications
Annotation Category
6
Gene expression levels
1
cis-regulatory elements
Annotation type Category
30
ChIP-seq
DNase-seq
5
single cell RNA-seq
1
RNA-seq
Available data
bed bed9
6
tsv
1
bed bed3+
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
Biosample term
52
HeLa-S3
48
H1-hESC
43
islet of Langerhans
42
monocyte
40
endothelial cell
30
fibroblast
28
macrophage
24
retina
22
EndoC_BH1
22
hepatocyte
22
neural progenitor cell
21
pancreatic ductal cell
21
smooth muscle cell
20
pigmented layer of retina
19
HFFc6
19
K562
19
pericyte cell
19
subcutaneous adipose tissue
18
pancreatic beta cell
17
epithelial cell of proximal tubule
17
liver
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
kidney
15
pancreatic delta cell
14
excitatory neuron
14
glomerular endothelial cell
14
pancreatic acinar cell
13
adipocyte
13
regulatory T cell
12
adipose tissue
11
CD8-positive, alpha-beta T cell
11
astrocyte
11
cardiomyocytes
11
embryonic stem cell
10
T cell
10
T-helper 1 cell
10
T-helper 17 cell
10
coronary artery
10
erythroblast
10
pancreatic stellate cell
9
B cell
9
GM12878
9
breast cancer cell
9
extended pluripotent stem (EPS) cells
9
keratinocyte
9
progenitor cell of endocrine pancreas
9
tibial nerve
8
cardiomyocytes (cardiac muscle cell)
8
glutamatergic neuron
8
memory B cell
8
right atrium auricular region
8
skeletal muscle fiber
7
CD4-positive, alpha-beta T cell
7
caudate nucleus
7
cerebellum
7
fibroblast cell line
7
frontal cortex
7
lymphoblastoid cell line
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
retinal pigment epithelial cell
7
skeletal muscle satellite cell
7
substantia nigra
6
Ammon's horn
6
H9
6
HepG2
6
T-helper 2 cell
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
body of pancreas
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
glomerular visceral epithelial cell
6
heart
6
heart left ventricle
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neutrophil
6
omental fat pad
6
osteoblast
6
tibial artery
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
ascending aorta
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
effector memory CD8-positive, alpha-beta T cell
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney loop of Henle thin ascending limb epithelial cell
5
mature neutrophil
5
mesangial cell
5
natural killer cell
4
CyT49
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
brain
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
fibroblast of cardiac tissue
4
foreskin fibroblast
4
glial cell
4
glioblastoma multiforme cancer stem cell
4
inflammatory macrophage
4
inhibitory neuron
4
kidney connecting tubule epithelial cell
4
kidney cortex collecting duct principal cell
4
kidney distal convoluted tubule epithelial cell
4
left cardiac atrium
4
lymphocyte
4
mammary epithelial cell
4
mast cell
4
melanoma
4
mesenchymal stem cell
4
naive B cell
4
nephron progenitor
4
nucleus accumbens
4
plasma cell
4
prostate cancer cell line
4
putamen
4
right lobe of liver
4
smooth muscle cell of the coronary artery
4
type II muscle cell
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
5
epithelium
5
kidney
Life stage
5
adult
Date released
5
September, 2023
1
February, 2021
1
May, 2021
Software used
4
r
2
deseq2
1
macs
Lab
5
KPMP
2
AMP-T2D consortium
Project
5
KPMP
2
AMP
RFA
5
KPMP
2
AMP
annotation_type!
histone modifications
annotation_type_category!
DNase-seq
files.file_type!
bed bed9
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR838YRC
released
Annotation file set
: Differential activity annotation of Medullary Thick Ascending Limb Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR360BTI
released
Annotation file set
: Differential activity annotation of Medullary Thick Ascending Limb Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR951ZVE
released
Annotation file set
: Gene expression annotation of Medullary Thick Ascending Limb Cell of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR478LJW
released
Annotation file set
: Gene expression annotation of Medullary Thick Ascending Limb Cell of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR607VUI
released
Annotation file set
: Gene expression annotation of Medullary Thick Ascending Limb Cell of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR782OVI
released
Annotation file set
: Gene expression annotation of multipotent stem cell_multipotent cardiac progenitor (MCP) PDGFRA+ISL1+ on day 3 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR818RAD
released
Annotation file set
: Binding sites annotation for Blood Hematopoietic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP