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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
binding sites
2
target gene predictions
1
chromatin state
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
37
HiC
12
snATAC-seq
8
ChIP-seq
7
ATAC-seq
7
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
8
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
4
cell line
3
in vitro differentiated cells
1
stem cell
Biosample term
59
stomach
57
heart
49
lung
49
muscle of arm
46
brain
44
kidney
44
small intestine
42
adrenal gland
41
A549
41
muscle of back
41
placenta
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
39
left lung
33
right lung
32
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
22
B cell
22
liver
22
spleen
17
MCF-7
16
K562
16
foreskin keratinocyte
16
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
mononuclear cell
14
sigmoid colon
14
trophoblast cell
13
foreskin fibroblast
13
neural progenitor cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
fibroblast of lung
12
gastrocnemius medialis
12
ovary
12
transverse colon
11
adipocyte
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
muscle of trunk
11
psoas muscle
11
thyroid gland
10
Peyer's patch
10
cardiac muscle cell
10
layer of hippocampus
10
testis
10
upper lobe of left lung
9
HeLa-S3
9
T-helper 1 cell
9
breast cancer cell
9
caudate nucleus
9
heart right ventricle
9
keratinocyte
9
neurosphere
9
retina
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
H9
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
bronchial epithelial cell
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
natural killer cell
8
tibial nerve
7
22Rv1
7
CD8-positive, alpha-beta T cell
7
HepG2
7
SK-N-SH
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
endodermal cell
7
epithelial cell of prostate
7
esophagus muscularis mucosa
7
fibroblast of cardiac tissue
7
left cardiac atrium
7
left renal cortex interstitium
7
lower leg skin
7
mammary gland epithelial cell
7
pancreas
7
regulatory T cell
7
right renal pelvis
7
skeletal muscle myoblast
7
temporal lobe
6
GM12878
6
HEK293
6
SK-N-DZ
6
WI38
6
angular gyrus
6
aorta
6
ascending aorta
6
chorion membrane
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
esophagus
6
eye
6
fibroblast cell line
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
left renal pelvis
6
mammary epithelial cell
6
omental fat pad
6
parathyroid adenoma
6
substantia nigra
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
H1-hESC
5
HL-60
5
IMR-90
5
LNCaP clone FGC
5
NAMALWA cell
5
SK-N-MC
5
T47D
5
WERI-Rb-1
5
cerebellum
5
choroid plexus epithelial cell
5
coronary artery
5
dermis lymphatic vessel endothelial cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
mesenchymal stem cell
5
mucosa of rectum
5
myoepithelial cell of mammary gland
5
neutrophil
5
prostate gland
5
right renal cortex interstitium
5
skin fibroblast
5
thoracic aorta
5
tongue
5
trophoblast
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caco-2 cell
4
Daoy
4
GM10248
4
GM10266
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
HAP-1
4
HT-29
4
HUES6
4
HUES64
4
KBM-7
4
LHCN-M2
4
MG63
4
MM.1S
4
NB4
4
NT2-D1 cell
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
PC-9
4
RPMI8226
4
RWPE1
4
SJSA1
4
SW480
4
T-cell
4
cardiac fibroblast
4
ectodermal cell
4
epithelial cell of proximal tubule
4
frontal cortex
4
glioblastoma multiforme cancer stem cell
4
islet of Langerhans
4
kidney tubule cell
4
limb
4
naive T cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
5
embryo
Life stage
6
embryonic
Date released
4
September, 2022
2
February, 2021
1
August, 2017
1
October, 2022
Software used
4
r
2
chromhmm
1
encode-ccres
1
macs
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
annotation_type!
histone modifications
Showing 8 of 8 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR087ISF
released
Annotation file set
: Candidate regulatory elements for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234JGB
released
Annotation file set
: Target gene predictions for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR634BEA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP