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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
27
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
65
heart
65
stomach
54
kidney
51
lung
50
muscle of arm
49
brain
47
adrenal gland
47
small intestine
43
A549
43
placenta
42
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
liver
36
islet of Langerhans
36
thymus
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
31
B cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
monocyte
27
CD14-positive monocyte
27
left kidney
26
spinal cord
25
spleen
24
adipose tissue
23
CD4-positive, alpha-beta memory T cell
22
adipocyte
22
regulatory T cell
21
EndoC_BH1
21
endothelial cell
21
epithelial cell of proximal tubule
21
neural progenitor cell
20
heart left ventricle
20
pigmented layer of retina
19
CD8-positive, alpha-beta T cell
19
MCF-7
19
glomerular endothelial cell
18
K562
18
T-helper 1 cell
17
T-helper 17 cell
17
foreskin keratinocyte
17
hepatocyte
17
natural killer cell
17
pancreatic ductal cell
17
sigmoid colon
16
embryonic stem cell
16
induced pluripotent stem cell
16
ovary
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H1-hESC
15
body of pancreas
15
foreskin fibroblast
15
psoas muscle
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic alpha cell
14
tibial nerve
14
transverse colon
13
CD4-positive, alpha-beta T cell
13
heart right ventricle
13
pancreas
13
pancreatic beta cell
13
pancreatic delta cell
13
subcutaneous adipose tissue
13
thyroid gland
12
T-helper 2 cell
12
fibroblast of lung
12
keratinocyte
12
muscle of trunk
12
neutrophil
12
skeletal muscle myoblast
12
skeletal muscle tissue
12
testis
12
upper lobe of left lung
11
T cell
11
cardiac muscle cell
11
chorionic villus
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
retinal pigment epithelial cell
HeLa-S3
10
HepG2
10
Peyer's patch
10
caudate nucleus
10
endocrine pancreas
10
layer of hippocampus
10
macrophage
10
osteoblast
10
smooth muscle cell
9
H9
9
cardiomyocytes
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
mammary epithelial cell
9
mammary gland epithelial cell
9
neurosphere
9
progenitor cell of endocrine pancreas
8
GM12878
8
aorta
8
breast cancer cell
8
breast epithelium
8
coronary artery
8
epithelial cell of prostate
8
fibroblast of cardiac tissue
8
left renal cortex interstitium
8
omental fat pad
8
pancreatic acinar cell
8
pituitary stalk
8
right atrium auricular region
8
right renal pelvis
8
trophoblast
7
22Rv1
7
HEK293
7
IMR-90
7
bronchial epithelial cell
7
cardiomyocytes (cardiac muscle cell)
7
colonic mucosa
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
left renal pelvis
7
lower leg skin
7
prostate gland
7
temporal lobe
7
tibial artery
6
Ammon's horn
6
GM06990
6
GM12864
6
GM12865
6
HAP-1
6
HL-60
6
HT-29
6
KARPAS-422 cell
6
NAMALWA cell
6
cardiac precursors (cardiac muscle cell)
6
choroid plexus epithelial cell
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
pancreatic stellate cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
skeletal muscle satellite cell
6
skin fibroblast
6
substantia nigra
6
thoracic aorta
6
tongue
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
histone modifications
assembly!
GRCh38
biosample_term_name!
HeLa-S3
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP