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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
20
fibroblast
19
pericyte cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
4
cartilage tissue
4
mesenchymal stem cell
3
adipocyte
3
fibroblast of cardiac tissue
2
articular chondrocyte
2
extracellular matrix secreting cell
2
luteal cell
2
mesangial cell
2
pancreatic stellate cell
2
skin fibroblast
2
stromal cell
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
fat cell
1
hepatic stellate cell
1
kidney interstitial fibroblast
Organ
3
connective tissue
Date released
2
February, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
AMP
2
AMP2
1
ENCODE3
annotation_type!
histone modifications
award.rfa!
AMP
biosample_term_name!
fat cell
Showing 3 of 3 results
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP