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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
Capture-C
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
17
primary cell
6
in vitro differentiated cells
Biosample term
42
hematopoietic multipotent progenitor cell
31
neural progenitor cell
22
adipocyte
13
embryonic stem cell
11
cardiomyocytes
10
mesenchymal stem cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
cardiomyocytes (cardiac muscle cell)
8
endodermal cell
7
cardiac muscle cell
7
mesendoderm
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
dendritic cell
6
mesodermal cell
6
muscle cell
6
neuronal stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
neural cell
5
smooth muscle cell
5
trophoblast cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
ectodermal cell
4
hepatocyte
4
islet precursor cell
4
neuron
4
olfactory neurosphere cell line
3
T-cell acute lymphoblastic leukemia
3
adipose-derived stem cell
3
cardiac mesoderm primordium
3
hepatocyte(AFP)
3
pancreatic ductal cell
2
B cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
colon adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
excitatory neuron
2
foreskin keratinocyte
2
foreskin melanocyte
2
hippocampal neuron
2
iPS DF 4.7 Cell Line
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
myocyte
2
myotube
2
neuroblastoma cell line
2
neuroepithelial stem cell
1
Adipose SGBS cell line (adipocyte)
1
BICR 31
1
CD4-positive helper T cell
1
CD8-Positive T-Lymphocytes
1
CD8-positive, alpha-beta T cell
1
EAhy 926 cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
T-lymphoma cell line
1
Th1 cell
1
atypical teratoid rhabdoid tumor
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chronic myelomonocytic leukemia
1
colorectal adenocarcinoma
1
diffuse intrinsic pontine glioma
1
diffuse large B-cell lymphoma
1
ecto neural progenitor cell
1
endometrial stromal cell
1
endometrial stromal tumor
1
endothelial cell
1
epidermal stem cell
1
erythroid cell
1
erythroid progenitor cell
1
esophageal adenocarcinoma
1
fibroblast
1
hematopoietic stem cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
natural killer cell
neuron cell of Hypothalamus (neuron)
1
osteosarcoma
1
radial glial cell
1
renal cell carcinoma
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
Organ
5
embryo
5
extraembryonic component
1
brain
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
May, 2021
1
September, 2023
Software used
2
r
1
abc
1
chicago
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Struan F.A. Grant, CHOP
Project
6
AMP
RFA
5
AMP
1
AMP2
annotation_type!
histone modifications
biosample_term_name!
neuron cell of Hypothalamus (neuron)
Showing 6 of 6 results
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Download
FileSet
DSR416XCR
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Neuron (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR843UFV
released
Annotation file set
: Candidate regulatory elements for BSS01857 trophoblast cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR046UMD
released
Annotation file set
: Target gene predictions for BSS01857 trophoblast cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR328FHX
released
Annotation file set
: Chromatin states for BSS01857 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR287MFH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE trophoblast cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR250DDG
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Trophoblast_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP