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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
68
lung
63
small intestine
61
A549
55
large intestine
52
left lung
45
right lung
23
sigmoid colon
19
transverse colon
16
fibroblast of lung
15
upper lobe of left lung
14
Peyer's patch
9
colon epithelial cell
9
colonic mucosa
9
duodenal mucosa
9
mucosa of rectum
8
IMR-90
8
muscle layer of colon
8
muscle layer of duodenum
7
HT-29
7
PC-9
7
WI38
7
type II pneumocyte
6
HCT116
6
SW480
6
enterocyte
5
lung microvascular endothelial cell
4
HCT-116 cell
4
NCI-H226 cell
4
NCI-H460 cell
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
4
type I pneumocyte
3
RKO
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
LoVo
1
NCI-H226
1
NCI-H460
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
endothelial cell of artery
1
lung neuroendocrine cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
3
colorectal adenocarcinoma
Organ
7
intestine
7
large intestine
0
lung
Life stage
4
adult
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
histone modifications
organ_slims!
bronchus
Showing 7 of 7 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP