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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
1
caQTL
1
chromatin state
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
3
DNase-seq
3
snATAC-seq
1
Capture-C
Available data
7
bed bed3+
2
bigWig
1
bed bed9
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
in vitro differentiated cells
Biosample term
32
adipose tissue
30
fibroblast
26
adipocyte
22
pericyte cell
21
subcutaneous adipose tissue
18
mesenchymal stem cell
18
omental fat pad
17
foreskin fibroblast
16
fibroblast of lung
15
fibroblast of cardiac tissue
15
osteoblast
12
fibroblast of dermis
11
skin fibroblast
10
pancreatic stellate cell
9
hepatic stellate cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
mesangial cell
6
GM23248
6
chondrocyte
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
cardiac fibroblast
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
4
HT1080
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
cartilage tissue
4
fibroblast of gingiva
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
pancreatic quiescent stellate cell
2
articular chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
luteal cell
2
preadipocyte
2
pulmonary interstitial fibroblast
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose tissue derived mesenchymal stem cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
columnar chondrocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
1
white adipose cell
1
white adipose tissue
Organ
8
connective tissue
5
blood vessel
5
vasculature
Life stage
4
unknown
Date released
3
September, 2022
2
April, 2020
1
February, 2021
1
February, 2023
1
September, 2023
Software used
2
r
1
chicago
1
chromhmm
1
encode-ccres
1
rasqual
Lab
5
AMP-T2D consortium
2
Xin Sun, UCSD
1
Struan F.A. Grant, CHOP
Project
6
AMP
2
LungMap
RFA
5
AMP
2
LungMap2
1
AMP2
annotation_type!
histone modifications
Showing 8 of 8 results
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Download
FileSet
DSR722BWL
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Adipocytes (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR902WKL
released
Annotation file set
: Candidate regulatory elements for BSS00347 fibroblast of the aortic adventitia from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987AUB
released
Annotation file set
: Target gene predictions for BSS00347 fibroblast of the aortic adventitia from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159VQB
released
Annotation file set
: Chromatin states for BSS00347 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR666HIS
released
Annotation file set
: ATAC-seq peaks in matrix fibroblast 1 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR190LDQ
released
Annotation file set
: ATAC-seq peaks in matrix fibroblast 2 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR761GFE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of the aortic adventitia
Lab:
AMP-T2D consortium
Project:
AMP