Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
histone modifications
1
binding sites
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ATAC-seq
1
ChIP-seq
1
scRNA-seq
1
snATAC-seq
Available data
4
bed bed3+
2
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
5
primary cell
Biosample term
54
common myeloid progenitor, CD34-positive
44
monocyte
40
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
fibroblast
28
macrophage
27
regulatory T cell
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
21
T-helper 17 cell
20
CD8-positive, alpha-beta T cell
20
mononuclear cell
20
natural killer cell
20
smooth muscle cell
17
T-helper 2 cell
17
trophoblast cell
16
astrocyte
16
fibroblast of lung
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
osteoblast
15
skeletal muscle myoblast
14
foreskin fibroblast
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
skeletal muscle satellite cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
erythroblast
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
glutamatergic neuron
8
hepatic stellate cell
8
mature neutrophil
8
pancreatic stellate cell
7
cardiac muscle cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney interstitial cell
7
mesangial cell
7
mesenchymal stem cell
7
type I muscle cell
7
type II muscle cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
foreskin melanocyte
6
gamma-delta T cell
6
naive B cell
6
olfactory receptor cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
mast cell
5
myofibroblast cell
5
peripheral blood mononuclear cell
5
plasma cell
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
blood cell
3
brain pericyte
3
ciliated cell
3
enteric neuron
3
glial cell
3
kidney cell
3
kidney resident macrophage
3
mammary stem cell
3
microglial cell
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
plasmacytoid dendritic cell
3
regular cardiac myocyte
3
renal epithelial cell
3
schwann cell
3
smooth muscle cell of the coronary artery
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Ishikawa
2
Kupffer cell
2
Muller cell
2
Th1 cell
2
Th17 cell
2
Th2 cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
articular chondrocyte
2
bone marrow cell
2
colon goblet cell
2
conventional dendritic cell
2
effector memory CD4-positive, alpha-beta T cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
intestinal tuft cell
2
luteal cell
2
mature NK T cell
2
melanocyte
2
mononuclear cell of bone marrow
2
myeloid dendritic cell
2
myotube
2
natural killer cell mediated cytotoxicity
2
neoplastic cell
2
neural cell
2
neuron
2
non-classical monocyte
2
peripheral blood stem cell
2
peripheral blood-derived erythroblast
2
preadipocyte
2
primordial germ cell
2
pulmonary interstitial fibroblast
2
regular atrial cardiac myocyte
2
skeletal muscle fibroblast
2
stellate neuron
2
stromal cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
Adipose stromal cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
Life stage
1
adult
Date released
2
February, 2021
2
November, 2021
1
May, 2020
Software used
2
macs
1
abc
1
r
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Project
3
AMP
2
ENCODE
RFA
3
AMP
2
ENCODE3
annotation_type!
histone modifications
organ_slims!
epithelium
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR097VJH
released
Annotation file set
: Target gene predictions of Plasma Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR086BPP
released
Annotation file set
: Accessible chromatin annotation of Plasma Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR063KUW
released
Annotation file set
: Binding sites annotation for Blood Plasma_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR611QBM
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Plasma Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR563MLU
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal plasma cell
Lab:
AMP-T2D consortium
Project:
AMP