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Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
4
luminal epithelial cell of mammary gland
3
mammary gland epithelial cell
2
mammary epithelial cell
1
MCF-7
Organ
3
epithelium
3
mammary gland
Date released
2
November, 2021
1
February, 2024
Software used
1
abc
1
deltasvm
1
macs
Lab
AMP-T2D consortium
3
Bing Ren, UCSD
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
annotation_type!
histone modifications
lab.title!
AMP-T2D consortium
organ_slims!
testis
Showing 3 of 3 results
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Download
FileSet
DSR990AWB
released
Annotation file set
: Target gene predictions of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR492XEZ
released
Annotation file set
: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR732VXG
released
Annotation file set
: Variant allelic effects annotation of Mammary epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP