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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
23
kidney
21
stomach
20
heart
17
lung
17
muscle of arm
15
epithelial cell of proximal tubule
15
muscle of back
14
adrenal gland
14
brain
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
small intestine
13
glomerular endothelial cell
13
left lung
11
cardiomyocytes
11
renal cortex interstitium
11
right lung
10
hematopoietic multipotent progenitor cell
10
renal pelvis
10
right kidney
10
spleen
10
thymus
9
breast cancer cell
9
induced pluripotent stem cell
9
left kidney
8
CD4-positive, alpha-beta T cell
8
foreskin keratinocyte
8
islet of Langerhans
8
spinal cord
7
CD8-positive, alpha-beta T cell
7
cardiac muscle cell
7
foreskin fibroblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
liver
7
melanoma
6
H9
6
MCF-7
6
endothelial cell
6
fibroblast cell line
6
heart left ventricle
6
kidney interstitial cell
6
mammary epithelial cell
6
subcutaneous adipose tissue
5
B cell
5
CD4-positive, alpha-beta memory T cell
5
adipose tissue
5
endothelial cell of umbilical vein
5
glomerular visceral epithelial cell
5
hepatocyte
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
neural progenitor cell
5
neuronal stem cell
5
osteoblast
5
peripheral blood mononuclear cell
5
prostate cancer cell line
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
5
testis
5
upper lobe of left lung
4
A549
4
CD14-positive monocyte
4
Peyer's patch
4
T-cell
4
WI38
4
adipocyte
4
body of pancreas
4
bone tissue
4
bronchial epithelial cell
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
foreskin melanocyte
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
glioblastoma multiforme cancer stem cell
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
mesangial cell
4
mesodermal cell
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
natural killer cell
4
nephron progenitor
4
neuroblastoma cell
4
neurosphere
4
ovary
4
pancreas
4
prostate gland
4
retina
4
right renal pelvis
4
skeletal muscle tissue
4
thyroid gland
4
transverse colon
4
trophoblast cell
3
22Rv1
3
HEK293
3
HepG2
3
LNCAP
3
MCF 10A
3
S-shaped body
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Tumor-derived cell line
3
acute myeloid leukemia
3
adult endothelial progenitor cell
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
cardiac precursors (cardiac muscle cell)
3
dermal fibroblast
3
dermis microvascular lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
endocrine pancreas
3
endodermal cell
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
fibroblast of lung
3
heart right ventricle
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
liposarcoma
3
mesenchymal stem cell
3
omental fat pad
3
parathyroid adenoma
3
psoas muscle
3
regulatory T cell
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
substantia nigra
3
suprapubic skin
3
synovial sarcoma cell
3
temporal lobe
3
tibial nerve
3
triple-negative breast cancer
3
trophoblast
2
AG10803
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
CMK
2
COLO-320 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12801
2
GM12864
2
GM12865
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM13976
2
GM13977
2
GM20000
2
GM23248
2
HAP-1
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HeLa-S3
2
IMR-90
2
Ishikawa
2
Jurkat
2
K562
2
KBM-7
2
Kupffer cell
2
LHCN-M2
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NAMALWA
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
PC-9
2
RKO
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Rh-4 cell
2
SJSA1
Organ
3
connective tissue
Life stage
1
adult
1
embryonic
Date released
6
September, 2022
3
February, 2021
3
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
histone modifications
biosample_term_name!
CMK
organ_slims!
placenta
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP