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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
histone modifications
1
target gene predictions
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
RNA-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
cell line
3
primary cell
Biosample term
89
heart
64
HeLa-S3
33
heart left ventricle
21
coronary artery
19
heart right ventricle
19
right atrium auricular region
15
fibroblast of cardiac tissue
12
left cardiac atrium
9
uterus
8
right cardiac atrium
6
smooth muscle cell of the coronary artery
5
left ventricle myocardium
4
cardiac fibroblast
3
Ishikawa
3
endocardial cell
2
cardiac endothelial cell
2
endothelial cell of coronary artery
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
aortic valve
1
cardiac atrium fibroblast
1
cardiac muscle myoblast
1
cardiac ventricle
1
cardiac ventricle fibroblast
1
cervix - ectocervix
1
endometrium
1
endometrium cancer
1
fetal heart
1
mitral valve
1
pulmonary valve
1
tricuspid valve
Organ
6
artery
6
blood vessel
6
heart
6
vasculature
0
uterus
Life stage
2
adult
1
unknown
Date released
3
February, 2021
1
February, 2020
1
February, 2023
1
May, 2021
Software used
2
macs
2
r
1
abc
1
rasqual
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
histone modifications
organ_slims!
lymphatic vessel
Showing 6 of 6 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP