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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
2
variant allelic effects
Annotation Category
2
Genetic variant effects
2
Target gene links
2
cis-regulatory elements
Annotation type Category
ChIP-seq
10
DNase-seq
2
ATAC-seq
1
Capture-C
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
1
stem cell
Biosample term
52
HeLa-S3
47
H1-hESC
43
endothelial cell
41
monocyte
34
macrophage
32
fibroblast
26
hepatocyte
26
retina
23
smooth muscle cell
22
pericyte cell
20
pigmented layer of retina
19
HFFc6
19
kidney
18
K562
18
epithelial cell of proximal tubule
18
neural progenitor cell
18
subcutaneous adipose tissue
17
glomerular endothelial cell
17
induced pluripotent stem cell
17
liver
16
B cell
16
adipocyte
15
CD14-positive monocyte
15
regulatory T cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
coronary artery
13
natural killer cell
12
adipose tissue
12
astrocyte
12
right atrium auricular region
12
tibial nerve
11
T cell
11
T-helper 1 cell
11
cardiomyocytes
11
heart
11
tibial artery
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
frontal cortex
10
pituitary stalk
10
putamen
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
heart left ventricle
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
Ammon's horn
8
GM12878
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
dendritic cell
8
embryonic stem cell
8
endothelial cell of lymphatic vessel
8
glutamatergic neuron
8
mast cell
8
mesenchymal stem cell
8
osteoblast
8
skeletal muscle satellite cell
7
H9
7
ascending aorta
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mesangial cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
stomach
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
endocardial cell
6
enterocyte
6
gamma-delta T cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
spleen
6
type II pneumocyte
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
myofibroblast cell
5
neuronal stem cell
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
cholangiocyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
leukocyte
Organ
1
brain
Date released
2
January, 2020
1
February, 2024
1
May, 2020
1
May, 2021
1
September, 2023
Software used
2
deltasvm
2
macs
1
abc
1
chicago
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Struan F.A. Grant, CHOP
Project
6
AMP
RFA
5
AMP
1
AMP2
annotation_type!
meQTL
annotation_type_category!
ChIP-seq
organ_slims!
pancreas
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR130JFC
released
Annotation file set
: enhancer-gene predicton of cardiac_muscle_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433FIX
released
Annotation file set
: Accessible chromatin annotation of heart cardiac muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433PLX
released
Annotation file set
: Cardiomyocytes (cardiac muscle cell) accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP