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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
binding sites
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
islet of Langerhans
2
pancreatic ductal cell
2
pancreatic stellate cell
1
Pancreatic islets
1
Schwann cell
1
endothelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
2
pancreas
Date released
1
April, 2019
1
February, 2024
1
March, 2020
Software used
1
chromhmm
1
macs
1
spp
Lab
41
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
annotation_type!
pQTL
Showing 3 of 3 results
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Download
FileSet
DSR062PXW
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Schwann
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP