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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
chromatin state
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ChIP-seq
Available data
2
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
2
released
1
revoked
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
B cell
3
CD8-positive, alpha-beta T cell
3
heart
3
islet of Langerhans
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
coronary artery
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
gamma-delta T cell
2
heart left ventricle
2
left renal cortex interstitium
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
regulatory T cell
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
2
skeletal muscle myoblast
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
activated CD4-positive, alpha-beta T cell
1
adipose tissue
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
erythroblast
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
inflammatory macrophage
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
megakaryocyte
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
occipital lobe
1
pancreas
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
1
thymus
Organ
3
heart
Life stage
2
fetal
Date released
69
September, 2022
34
February, 2021
7
March, 2023
3
May, 2020
2
January, 2020
2
June, 2020
1
April, 2019
1
August, 2021
1
February, 2020
1
March, 2020
1
May, 2021
1
November, 2019
Software used
2
deltasvm
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
pQTL
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP