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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
62
HeLa-S3
57
A549
52
H1-hESC
44
CD8-positive, alpha-beta T cell
44
neural progenitor cell
40
common myeloid progenitor, CD34-positive
38
K562
37
B cell
33
endothelial cell
32
hematopoietic multipotent progenitor cell
31
hepatocyte
30
macrophage
29
fibroblast
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
24
regulatory T cell
24
smooth muscle cell
23
T cell
22
adipocyte
22
pericyte cell
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
20
T-helper 1 cell
19
HFFc6
19
T-helper 17 cell
19
pancreatic ductal cell
18
MCF-7
18
mononuclear cell
18
trophoblast cell
17
natural killer cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
15
T-helper 2 cell
15
astrocyte
15
endothelial cell of umbilical vein
15
mesenchymal stem cell
15
pancreatic delta cell
14
excitatory neuron
14
fibroblast of cardiac tissue
14
pancreatic acinar cell
14
pancreatic alpha cell
13
GM12878
13
HepG2
13
embryonic stem cell
13
fibroblast of lung
13
foreskin keratinocyte
13
keratinocyte
13
mammary gland epithelial cell
13
neutrophil
12
retinal pigment epithelial cell
12
skeletal muscle satellite cell
11
erythroblast
11
fibroblast of dermis
11
skeletal muscle myoblast
10
H9
10
foreskin fibroblast
9
cardiac muscle cell
9
colon epithelial cell
9
endometrium adenocarcinoma
9
extended pluripotent stem (EPS) cells
9
immortal human breast epithelial cell line cell
9
kidney tubule cell
9
lymphocyte
9
memory B cell
9
naive T cell
9
osteoblast
9
skin fibroblast
8
SK-N-SH
8
epithelial cell of prostate
8
epithelial cell of proximal tubule
8
glomerular endothelial cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
induced pluripotent stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
bronchial epithelial cell
7
choroid plexus epithelial cell
7
dendritic cell
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
lymphoblastoid cell line
7
mature neutrophil
7
naive thymus-derived CD8-positive, alpha-beta T cell
6
22Rv1
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
alternatively activated macrophage
6
cardiomyocytes (cardiac muscle cell)
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
enterocyte
6
fibroblast of breast
6
iPSC derived cell line
6
kidney epithelial cell
6
mesendoderm
6
muscle cell
6
myoepithelial cell of mammary gland
6
neurosphere
6
pancreatic stellate cell
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
Glomerular Capillary Endothelial Cell
5
H7-hESC
5
HAP-1
5
HCT116
5
HEK293
5
HL-60
5
HT-29
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LoVo cell
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MM.1S
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
NT2-D1 cell
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
OCI-LY7
5
PC-9
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SK-N-MC
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
WERI-Rb-1
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
representative DNase hypersensitivity sites
biosample_type!
tissue
month_released!
February, 2021
organ_slims!
pituitary gland
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP