Clear Filters

Annotation type

3018target gene predictions
2638pQTL
1709candidate regulatory elements
1248accessible chromatin
977histone modifications
944chromatin state
817binding sites
684gene expression
481differential activity
180eQTL
141variant allelic effects
74Fine-mapped variants
25caQTL
sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

5696cis-regulatory elements
3071Genetic variant effects
3018Target gene links
1165Gene expression levels
2Others

Annotation type Category

5248ChIP-seq
4522DNase-seq
2638quantitative proteomics
539RNA-seq
515ATAC-seq
460snATAC-seq
305single cell RNA-seq
189HiC
143scRNA-seq
139H3K27ac ChIP-Seq
84snDropSeq
47pCHi-C
25snRNA-seq
16Expression arrays
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
1SNP-SELEX

Available data

8067bed bed3+
3547tsv
869bed bed9
546bigWig
112txt
40bigBed bed9
34bed bed9+
24csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

12950released
1archived
1revoked

Genome assembly (visualization)

6999hg19
3905GRCh38
4hg18

Organism

12904Homo sapiens

Biosample type

5949tissue
3924primary cell
2559cell line
514in vitro differentiated cells
4stem cell

Biosample term

2636whole blood
134monocyte
110heart
107stomach
95kidney
93fibroblast
91endothelial cell
89brain
86head of caudate nucleus
84muscle of arm
82lung
82placenta
77adrenal gland
76A549
76small intestine
74macrophage
73CD8-positive, alpha-beta T cell
71muscle of leg
70large intestine
70smooth muscle cell
69muscle of back
68HeLa-S3
68T-cell
67left lung
66B cell
66common myeloid progenitor, CD34-positive
64CD4-positive, alpha-beta T cell
59dorsolateral prefrontal cortex
57thymus
56right lung
55hematopoietic multipotent progenitor cell
55stimulated activated CD4-positive, alpha-beta T cell
54H1-hESC
52hepatocyte
52neural progenitor cell
52right kidney
51natural killer cell
51renal cortex interstitium
50liver
50renal pelvis
48K562
48posterior cingulate gyrus
46adipocyte
45T cell
45left kidney
44heart left ventricle
43islet of Langerhans
43retina
41spinal cord
39CD14-positive monocyte
39spleen
38cardiac muscle cell
37CD4-positive, alpha-beta memory T cell
33MCF-7
33activated CD4-positive, alpha-beta T cell
32T-helper 1 cell
32glutamatergic neuron
32pericyte
31adipose tissue
31astrocyte
31keratinocyte
31pancreatic ductal cell
29heart right ventricle
29ovary
28T-helper 17 cell
28body of pancreas
28regulatory T cell
28tibial nerve
28trophoblast cell
26CD8-positive, alpha-beta memory T cell
26T-helper 2 cell
26epithelial cell of proximal tubule
26naive thymus-derived CD4-positive, alpha-beta T cell
26pancreas
25psoas muscle
25stimulated activated CD8-positive, alpha-beta memory T cell
24dendritic cell
24endothelial cell of lymphatic vessel
24foreskin keratinocyte
24gastrocnemius medialis
24neuron
24pericyte cell
24sigmoid colon
23EndoC_BH1
23H9
23caudate nucleus
23foreskin fibroblast
23upper lobe of left lung
22GABAergic neuron
22HCT116
22endothelial cell of umbilical vein
22glomerular endothelial cell
22thyroid gland
21coronary artery
21right atrium auricular region
21testis
21tibial artery
20breast cancer cell
20mesenchymal stem cell
20mononuclear cell
20naive thymus-derived CD8-positive, alpha-beta T cell
20subcutaneous adipose tissue
20transverse colon
19HFFc6
19HepG2
19endocardial cell
19hepatic stellate cell
19omental fat pad
18ascending aorta
18embryonic stem cell
18muscle of trunk
18pancreatic beta cell
17Peyer's patch
17erythroblast
17fibroblast of lung
17frontal cortex
16GM12878
16cerebellum
16chorionic villus
16endothelial cell of hepatic sinusoid
16fibroblast of cardiac tissue
16induced pluripotent stem cell
16mast cell
16pigmented layer of retina
16skeletal muscle satellite cell
16substantia nigra
15activated T-cell
15bronchial epithelial cell
15mammary epithelial cell
15retinal pigment epithelial cell
15skeletal muscle myoblast
14activated CD8-positive, alpha-beta memory T cell
14aorta
14endocrine pancreas
14layer of hippocampus
14left renal cortex interstitium
14osteoblast
14right renal pelvis
14skeletal muscle tissue
13breast epithelium
13dermis blood vessel endothelial cell
13excitatory neuron
13fibroblast of dermis
13glomerular visceral epithelial cell
13left cardiac atrium
13mammary gland epithelial cell
13naive B cell
13pancreatic acinar cell
13pancreatic alpha cell
13pancreatic delta cell
13prostate gland
12Ammon's horn
12SK-N-DZ
12colonic mucosa
12epithelial cell of prostate
12left renal pelvis
11IMR-90
11SK-N-SH
11choroid plexus epithelial cell
11esophagus muscularis mucosa
11neuronal stem cell
11neurosphere
11progenitor cell of endocrine pancreas
11putamen
11thoracic aorta
10Rhabdomyosarcoma
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10limb
10lymphoblastoid cell line
10neuroblastoma cell
10thyroid follicular cell
922Rv1
9GM06990
9HAP-1
9HT-29
9PC-9
9SK-N-MC
9WERI-Rb-1
9WI38
9cardiomyocytes
9diffuse intrinsic pontine glioma
9esophagus
9eye
9globus pallidus
9kidney tubule cell
9lower leg skin
9progenitor cell
9temporal lobe
9tongue
8B Cell
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8MM.1S
8NAMALWA cell
8OCI-LY7

Organ

3365blood
2902vasculature
2861blood vessel
2853bodily fluid
2659vein
948epithelium
903brain
756kidney
516connective tissue
488heart
440lung
386musculature of body
358intestine
313pancreas
296skin of body
244limb
240liver
226large intestine
215embryo
174extraembryonic component
161eye
142adipose tissue
140stomach
111muscle organ
104bone element
104mammary gland
102adrenal gland
97placenta
97small intestine
93thymus
93uterus
88artery
87prostate gland
73ureter
64gonad
64penis
63spleen
62lymph node
60__MARKER__
49spinal cord
48esophagus
47thyroid gland
32ovary
31testis
25nerve
24lymphoid tissue
22skeleton
21lymphatic vessel
21mouth
16bronchus
15breast
13bone marrow
13pituitary gland
13urinary bladder
12tongue
12vagina
5trachea
4nose
1embryonic structure
1gallbladder
1pericardium

Life stage

5064adult
1386embryonic
468unknown
458fetal
115child
75newborn
32young adult
30postnatal

Date released

2636February, 2025
2590February, 2021
2511September, 2022
1984July, 2026
386May, 2021
373February, 2024
333November, 2021
320May, 2026
289June, 2020
286September, 2023
155May, 2020
128March, 2020
127August, 2021
106January, 2022
101October, 2022
89January, 2020
65March, 2023
64February, 2020
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
30March, 2024
19April, 2020
14November, 2019
14October, 2019
9August, 2018
9May, 2019
8April, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2558macs
2382r
1035chromhmm
838encode-ccres
250abc
136deltasvm
136qTLtools
117deseq2
36cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
18samtools
14hiccups
13matrix-eQTL
12deeptools
12limix
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

11407AMP-T2D consortium
498Kyle Gaulton, UCSD
393Bing Ren, UCSD
281KPMP
139Jesse Engreitz, Stanford University
98Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA
2Doug Phanstiel, UNC

Project

12239AMP
333ENCODE
281KPMP
60T1D
19LungMap
15community
5ITG

Collection Tags

2635UK_Biobank
2499EpiMap
1848ChIP-Atlas