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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
61
HeLa-S3
53
H1-hESC
51
CD8-positive, alpha-beta T cell
47
neural progenitor cell
44
A549
43
endothelial cell
41
common myeloid progenitor, CD34-positive
39
B cell
36
hepatocyte
35
K562
35
fibroblast
35
macrophage
33
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
27
adipocyte
26
smooth muscle cell
25
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
natural killer cell
23
pancreatic ductal cell
23
pericyte cell
22
epithelial cell of proximal tubule
21
MCF-7
20
breast cancer cell
20
glomerular endothelial cell
19
HFFc6
19
T-helper 1 cell
19
keratinocyte
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreatic beta cell
17
foreskin fibroblast
17
pancreatic alpha cell
17
trophoblast cell
16
HepG2
16
astrocyte
16
cardiac muscle cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
pancreatic acinar cell
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
endothelial cell of umbilical vein
15
mesenchymal stem cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
14
mononuclear cell
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
skeletal muscle myoblast
12
embryonic stem cell
12
fibroblast of lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
neutrophil
11
erythroblast
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
hepatic stellate cell
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
choroid plexus epithelial cell
8
fibroblast cell line
8
mast cell
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
mature neutrophil
7
memory B cell
7
mesendoderm
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
fibroblast of pulmonary artery
6
hESC cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
plasma cell
6
renal cortical epithelial cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
Glomerular Capillary Endothelial Cell
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
LHCN-M2
5
LoVo cell
5
Lymphatic Endothelial Cell
5
MG63
5
MM.1S
5
Non-Classical Monocyte
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
5
SW480
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
sQTL
biosample_type!
tissue
files.file_type!
bed bed9
organ_slims!
tongue
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP