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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
2
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
52
heart
52
kidney
44
brain
44
stomach
43
islet of Langerhans
34
lung
34
muscle of arm
34
retina
33
placenta
32
liver
32
small intestine
31
adrenal gland
30
muscle of leg
28
large intestine
26
left lung
26
muscle of back
25
thymus
23
adipose tissue
23
right lung
22
right kidney
21
heart left ventricle
21
renal pelvis
20
pigmented layer of retina
20
renal cortex interstitium
19
tibial nerve
18
left kidney
18
subcutaneous adipose tissue
17
caudate nucleus
17
coronary artery
17
spleen
16
right atrium auricular region
16
spinal cord
16
tibial artery
15
body of pancreas
14
frontal cortex
14
pancreas
13
cerebellum
13
putamen
13
substantia nigra
12
ascending aorta
12
omental fat pad
11
heart right ventricle
11
ovary
11
sigmoid colon
11
testis
10
layer of hippocampus
10
left cardiac atrium
10
prostate gland
10
skeletal muscle tissue
10
thyroid gland
10
transverse colon
9
Ammon's horn
9
gastrocnemius medialis
9
psoas muscle
9
temporal lobe
9
upper lobe of left lung
8
chorionic villus
8
endocrine pancreas
8
muscle of trunk
7
Peyer's patch
7
amygdala
7
aorta
7
chorion membrane
7
hypothalamus
7
midbrain
7
nucleus accumbens
7
occipital lobe
7
right lobe of liver
7
thoracic aorta
6
angular gyrus
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
colonic mucosa
6
esophagus muscularis mucosa
6
globus pallidus
6
left renal cortex interstitium
6
left renal pelvis
6
right renal cortex interstitium
6
right renal pelvis
6
superior temporal gyrus
6
trophoblast
6
vagina
5
C1 segment of cervical spinal cord
5
breast epithelium
5
cartilage tissue
5
cingulate gyrus
5
duodenal mucosa
5
esophagus
5
esophagus squamous epithelium
5
eye
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
limb
5
medulla oblongata
5
mucosa of rectum
5
pons
5
right cardiac atrium
5
skin of body
5
stomach smooth muscle
5
tongue
5
urinary bladder
5
uterus
4
Brodmann (1909) area 46
4
bone tissue
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
lower leg skin
4
middle frontal gyrus
4
muscle layer of colon
4
muscle layer of duodenum
4
parathyroid adenoma
4
umbilical cord
4
visceral abdominal adipose tissue
3
cerebellar cortex
3
embryonic facial prominence
3
germinal matrix
3
inferior parietal cortex
3
prefrontal cortex
3
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
amnion
2
arm bone
2
blood
2
breast carcinoma
2
dorsolateral prefrontal cortex
2
endometrium cancer
2
fallopian tube
2
femur
2
first pancreatic bud
2
gastroesophageal sphincter
2
germinal center
2
kidney epithelium
2
leg bone
2
mammary gland
2
minor salivary gland
2
mucosa of stomach
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bladder
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
forelimb muscle
1
frontal pole
1
glomerular epithelium
1
gyrus rectus
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
locus ceruleus
Organ
4
limb
4
skin of body
Life stage
4
adult
Date released
4
September, 2022
Software used
encode-ccres
2
chromhmm
2
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
target gene predictions
assembly!
hg18
software_used.software.name!
encode-ccres
Showing 4 of 4 results
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Download
FileSet
DSR151KKO
released
Annotation file set
: Candidate regulatory elements for BSS01182 lower leg skin from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR235JET
released
Annotation file set
: Candidate regulatory elements for BSS01181 lower leg skin from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR015XPU
released
Annotation file set
: Chromatin states for BSS01182 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR867RLZ
released
Annotation file set
: Chromatin states for BSS01181 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP