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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
100
monocyte
18
fibroblast
18
macrophage
16
endothelial cell of hepatic sinusoid
16
hepatocyte
13
common myeloid progenitor, CD34-positive
12
endothelial cell
12
excitatory neuron
11
B cell
11
T cell
10
pericyte cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
7
CD8-positive, alpha-beta memory T cell
7
smooth muscle cell
6
mononuclear cell
5
erythroblast
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
regulatory T cell
5
skeletal muscle satellite cell
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
foreskin keratinocyte
4
keratinocyte
4
mammary gland epithelial cell
4
natural killer cell
4
osteoblast
4
pancreatic acinar cell
4
pancreatic beta cell
4
trophoblast cell
3
cardiac fibroblast
3
CD4-positive helper T cell
3
blood cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
kidney tubule cell
3
luminal epithelial cell of mammary gland
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
pancreatic ductal cell
3
retinal pigment epithelial cell
3
skeletal muscle fiber
3
skin fibroblast
3
type II pneumocyte
2
Muller cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
gabaergic neuron
2
glomerular endothelial cell
2
glutamatergic neuron
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
mesangial cell
2
mesothelial cell
2
microglial cell
2
myoepithelial cell of mammary gland
2
oligodendrocyte precursor cell
2
renal cortical epithelial cell
2
schwann cell
2
skeletal muscle cell
2
skeletal muscle myoblast
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
type I pneumocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
Leydig cell
1
T follicular helper cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic endothelial cell
1
astrocyte of the spinal cord
1
basal cell
1
basal cell of epidermis
1
brain pericyte
1
cardiac endothelial cell
1
cardiac muscle cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
helper T cell
1
hepatoblast
1
intestinal tuft cell
1
iris pigment epithelial cell
1
islet of Langerhans
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
luteal cell
1
mammary stem cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
memory B cell
1
mesenchymal stem cell
1
metanephros
1
myoepithelial cell
1
naive B cel
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neuron
1
non keratinizing barrier epithelial cell
1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
pancreatic delta cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
pulmonary artery endothelial cell
1
regular atrial cardiac myocyte
1
regular cardiac myocyte
1
respiratory goblet cell
1
retinal bipolar neuron
1
sensory neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
stomach neuroendocrine cell
1
stromal cell
1
stromal cell of bone marrow
1
sympathetic neuron
1
thyroid follicular cell
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type II cell of adrenal cortex
1
type II muscle cell
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
2
November, 2021
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
annotation_type!
target gene predictions
organ_slims!
vein
Showing 2 of 2 results
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Download
FileSet
DSR041TBN
released
Annotation file set
: Accessible chromatin annotation of Vascular Smooth Muscle 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR564ZHK
released
Annotation file set
: Accessible chromatin annotation of Vascular Smooth Muscle 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE