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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
2
bigWig
1
bed bed9
File set status
3
released
Genome assembly (visualization)
16
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
100
monocyte
27
neural progenitor cell
25
kidney
24
heart
21
brain
21
fibroblast
21
macrophage
20
stomach
18
A549
18
hepatocyte
17
lung
17
muscle of arm
16
endothelial cell
16
endothelial cell of hepatic sinusoid
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
14
B cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
12
coronary artery
12
heart left ventricle
12
pericyte cell
11
T cell
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
10
smooth muscle cell
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
caudate nucleus
9
left kidney
9
right atrium auricular region
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
islet of Langerhans
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
left cardiac atrium
7
natural killer cell
7
subcutaneous adipose tissue
6
Ammon's horn
6
HepG2
6
K562
6
heart right ventricle
6
lymphoblastoid cell line
6
mononuclear cell
6
pancreas
5
MCF-7
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
endothelial cell of lymphatic vessel
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
hypothalamus
5
inhibitory neuron
5
nucleus accumbens
5
ovary
5
pancreatic acinar cell
5
pancreatic ductal cell
5
regulatory T cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle satellite cell
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocardial cell
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
hepatic stellate cell
4
keratinocyte
4
layer of hippocampus
4
left ventricle myocardium
4
mammary gland epithelial cell
4
mast cell
4
muscle of trunk
4
osteoblast
4
pancreatic beta cell
4
psoas muscle
4
skin of body
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HeLa-S3
3
Peyer's patch
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle fiber
3
skeletal muscle tissue
3
skin fibroblast
3
type II pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellar cortex
2
cholangiocyte
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
gabaergic neuron
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
iPSC derived cell line
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
limb
2
lower leg skin
2
medulla oblongata
2
mesangial cell
Life stage
1
embryonic
Date released
2
January, 2020
1
September, 2022
Software used
2
macs
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
target gene predictions
biosample_term_name!
endocrine pancreas
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR313BZF
released
Annotation file set
: Chromatin states for BSS00171 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433FIX
released
Annotation file set
: Accessible chromatin annotation of heart cardiac muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433PLX
released
Annotation file set
: Cardiomyocytes (cardiac muscle cell) accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP