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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
23
endothelial cell
19
fibroblast
16
endothelial cell of hepatic sinusoid
16
macrophage
15
kidney
13
smooth muscle cell
12
excitatory neuron
12
hepatocyte
12
pericyte cell
7
B cell
7
astrocyte
7
induced pluripotent stem cell
7
skeletal muscle fiber
6
T cell
6
endothelial cell of lymphatic vessel
6
natural killer cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
erythroblast
5
inhibitory neuron
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
4
cartilage tissue
4
endocardial cell
4
mast cell
4
mesenchymal stem cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
type II pneumocyte
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
glial cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
type I pneumocyte
2
EndoC_BH1
2
Muller cell
2
articular chondrocyte
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
dendritic cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
myofibroblast cell
2
neural cell
2
neuronal stem cell
2
oligodendrocyte precursor cell
2
regular ventricular cardiac myocyte
2
renal principal cell
2
schwann cell
2
smooth muscle cell of the esophagus
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
cardiac endothelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
inflammatory macrophage
1
intestinal tuft cell
1
islet of Langerhans
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
monocyte
1
myoepithelial cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
pancreatic polypeptide-secreting cell
Organ
3
epithelium
3
pancreas
Date released
2
November, 2021
1
January, 2021
Software used
3
macs
Lab
2
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
ENCODE
1
T1D
RFA
AMP
2
ENCODE3
1
T1D
annotation_type!
target gene predictions
award.rfa!
AMP
month_released!
June, 2020
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR864AEY
released
Annotation file set
: Accessible chromatin annotation of Fetal Pancreatic Ductal Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR237XFF
released
Annotation file set
: Accessible chromatin annotation of Ductal Cell (Pancreatic) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR780YWW
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D