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Getting started
Schema
Clear Filters
Annotation type
target gene predictions
2638
pQTL
1708
candidate regulatory elements
1248
accessible chromatin
977
histone modifications
943
chromatin state
817
binding sites
685
gene expression
484
differential activity
180
eQTL
141
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5694
cis-regulatory elements
3078
Genetic variant effects
1169
Gene expression levels
2
Others
Annotation type Category
4413
ChIP-seq
2638
quantitative proteomics
2091
DNase-seq
546
RNA-seq
428
snATAC-seq
305
single cell RNA-seq
265
ATAC-seq
147
scRNA-seq
84
snDropSeq
25
snRNA-seq
17
Expression arrays
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
5049
bed bed3+
3551
tsv
868
bed bed9
543
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
13
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
9941
released
1
archived
1
revoked
Genome assembly (visualization)
5643
hg19
1958
GRCh38
4
hg18
Organism
9895
Homo sapiens
Biosample type
4767
tissue
2815
primary cell
1953
cell line
405
in vitro differentiated cells
1
stem cell
Biosample term
2636
whole blood
132
monocyte
73
endothelial cell
72
heart
67
kidney
65
fibroblast
65
stomach
60
macrophage
57
brain
51
lung
51
muscle of arm
51
smooth muscle cell
50
B cell
46
CD8-positive, alpha-beta T cell
46
neural progenitor cell
46
small intestine
45
adrenal gland
45
placenta
44
islet of Langerhans
44
muscle of leg
43
A549
42
hepatocyte
42
large intestine
41
T cell
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
adipocyte
39
left lung
39
natural killer cell
38
liver
37
retina
34
right lung
34
thymus
33
cardiac muscle cell
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
pancreatic ductal cell
27
heart left ventricle
27
left kidney
27
pericyte
27
spinal cord
25
spleen
24
astrocyte
24
epithelial cell of proximal tubule
24
neuron
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
22
EndoC_BH1
22
GABAergic neuron
22
tibial nerve
21
endothelial cell of lymphatic vessel
21
glutamatergic neuron
21
keratinocyte
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
MCF-7
19
T-helper 1 cell
19
body of pancreas
19
caudate nucleus
18
K562
18
T-helper 17 cell
18
foreskin keratinocyte
17
coronary artery
17
dendritic cell
17
embryonic stem cell
17
right atrium auricular region
16
endocardial cell
16
endothelial cell of hepatic sinusoid
16
foreskin fibroblast
16
hepatic stellate cell
16
mast cell
16
pancreas
16
retinal pigment epithelial cell
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
endothelial cell of umbilical vein
15
induced pluripotent stem cell
15
omental fat pad
15
osteoblast
15
pancreatic beta cell
15
trophoblast cell
14
H1-hESC
14
frontal cortex
14
heart right ventricle
14
mesenchymal stem cell
14
pancreatic acinar cell
14
pericyte cell
14
skeletal muscle myoblast
14
skeletal muscle satellite cell
14
testis
13
CD8-positive, alpha-beta memory T cell
13
HepG2
13
T-helper 2 cell
13
cerebellum
13
excitatory neuron
13
gastrocnemius medialis
13
mononuclear cell
13
ovary
13
pancreatic alpha cell
13
putamen
13
skeletal muscle tissue
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
ascending aorta
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
psoas muscle
12
temporal lobe
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
bronchial epithelial cell
11
erythroblast
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neuronal stem cell
11
neutrophil
11
prostate gland
10
Ammon's horn
10
Rhabdomyosarcoma
10
chorionic villus
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
muscle of trunk
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
9
Peyer's patch
9
cardiomyocytes
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
esophagus muscularis mucosa
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neurosphere
8
22Rv1
8
SK-N-DZ
8
aorta
8
esophagus squamous epithelium
8
fibroblast of dermis
8
kidney tubule cell
8
oligodendrocyte
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle fiber
7
B Cell
7
B-lymphoblastoid cell line
7
GM12865
7
HeLa-S3
7
IMR-90
7
amygdala
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
leukocyte
7
mature neutrophil
7
medium spiny neuron
7
pancreatic A cell
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Chondroid Chordoma
6
GM12878
6
H9
6
HEK293
6
SW480
6
angular gyrus
6
anterior cingulate cortex
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
Organ
2871
vasculature
2823
blood vessel
2796
bodily fluid
2787
blood
2654
vein
830
epithelium
594
kidney
560
brain
435
connective tissue
362
heart
306
musculature of body
257
pancreas
251
lung
216
intestine
195
limb
190
liver
179
skin of body
131
embryo
130
large intestine
125
adipose tissue
119
eye
110
extraembryonic component
89
stomach
75
artery
75
bone element
68
mammary gland
63
prostate gland
61
small intestine
60
__MARKER__
56
adrenal gland
56
placenta
53
lymph node
53
penis
52
thymus
51
ureter
39
gonad
38
spleen
35
esophagus
34
spinal cord
25
thyroid gland
25
uterus
22
muscle organ
22
nerve
22
testis
18
lymphatic vessel
17
skeleton
16
lymphoid tissue
16
ovary
15
mouth
13
bronchus
10
bone marrow
10
breast
8
tongue
8
vagina
7
urinary bladder
5
trachea
3
nose
3
pituitary gland
1
pericardium
Life stage
4704
adult
1054
embryonic
368
unknown
254
fetal
81
child
57
newborn
32
young adult
30
postnatal
Date released
2636
February, 2025
2588
February, 2021
1675
September, 2022
323
July, 2026
320
May, 2026
289
June, 2020
281
September, 2023
250
May, 2021
222
November, 2021
199
February, 2024
137
May, 2020
128
August, 2021
105
January, 2022
101
October, 2022
88
January, 2020
84
March, 2020
70
March, 2023
64
February, 2020
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
28
January, 2021
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2558
macs
1552
r
1034
chromhmm
838
encode-ccres
139
qTLtools
136
deltasvm
117
deseq2
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
4
cicero
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
8679
AMP-T2D consortium
471
Kyle Gaulton, UCSD
281
Bing Ren, UCSD
281
KPMP
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
3
Struan F.A. Grant, CHOP
Project
9367
AMP
281
KPMP
222
ENCODE
32
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
1848
ChIP-Atlas
1664
EpiMap
966
ENCODE
458
DGA
418
AMP
376
T1D
320
pyxis
294
T2DKP
281