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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
target gene predictions
2
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
128
monocyte
45
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
32
endothelial cell
30
B cell
29
hepatocyte
25
fibroblast
25
macrophage
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
21
epithelial cell of proximal tubule
20
T-helper 1 cell
19
glomerular endothelial cell
18
T cell
18
T-helper 17 cell
16
endothelial cell of hepatic sinusoid
16
natural killer cell
16
pancreatic ductal cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
osteoblast
15
pancreatic beta cell
14
T-helper 2 cell
14
endothelial cell of umbilical vein
14
foreskin fibroblast
14
mononuclear cell
14
pancreatic alpha cell
14
skeletal muscle myoblast
14
smooth muscle cell
13
astrocyte
13
pancreatic acinar cell
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
fibroblast of lung
12
keratinocyte
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neutrophil
12
pancreatic delta cell
12
pericyte cell
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
neurosphere
9
erythroblast
9
mammary gland epithelial cell
9
mature neutrophil
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
retinal pigment epithelial cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic stellate cell
6
CD1c-positive myeloid dendritic cell
6
enterocyte
6
epithelial cell of prostate
6
fibroblast of breast
6
gamma-delta T cell
6
glutamatergic neuron
6
kidney glomerular epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skin fibroblast
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
tracheal epithelial cell
5
type II pneumocyte
4
T-cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
basal cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
vascular associated smooth muscle cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
Organ
2
brain
2
connective tissue
2
intestine
2
vasculature
Life stage
1
adult
Date released
January, 2020
2
May, 2020
2
November, 2021
Software used
2
deltasvm
2
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
annotation_type!
target gene predictions
month_released!
January, 2020
Showing 4 of 4 results
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Download
FileSet
DSR300AWQ
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR441RLT
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR631MKV
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac fibroblast DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR529VUE
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac fibroblast adult DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP