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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
12
K562
7
GM12878
6
GM06990
6
HL-60
5
CMK
5
GM12875
5
GM19240
5
HAP-1
5
OCI-LY7
5
RPMI8226
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
KBM-7
4
NAMALWA cell
3
GM10847
3
GM12872
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
NB4
2
NAMALWA
1
GM12874
1
Karpas-422
Organ
7
blood
7
bodily fluid
Life stage
3
adult
Date released
3
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
1
September, 2022
Software used
3
chromhmm
3
macs
1
encode-ccres
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
annotation_type!
target gene predictions
software_used.software.name!
r
Showing 7 of 7 results
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FileSet
DSR903JTP
released
Annotation file set
: Binding sites annotation for GM12878 (GM12878) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR665OQJ
released
Annotation file set
: Chromatin states for BSS00439 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589MOX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM12878
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549ZJZ
released
Annotation file set
: Histone modifications annotation for Blood GM12878 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR862UKP
released
Annotation file set
: Binding sites annotation for Blood GM12878 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR789FEO
released
Annotation file set
: Accessible chromatin annotation for Blood GM12878 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR588101
released
Annotation file set
: ChromHMM 13-state model for GM12878
Lab:
Stephen Parker, UMich
Project:
AMP