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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
128
monocyte
70
heart
67
kidney
65
stomach
57
brain
51
lung
51
muscle of arm
46
neural progenitor cell
46
small intestine
45
CD8-positive, alpha-beta T cell
45
adrenal gland
45
placenta
44
islet of Langerhans
44
muscle of leg
43
A549
42
large intestine
41
muscle of back
39
left lung
39
liver
37
retina
34
right lung
34
thymus
33
endothelial cell
32
right kidney
31
hepatocyte
31
renal cortex interstitium
31
renal pelvis
30
common myeloid progenitor, CD34-positive
30
hematopoietic multipotent progenitor cell
29
B cell
28
macrophage
27
fibroblast
27
heart left ventricle
27
left kidney
27
spinal cord
25
spleen
22
EndoC_BH1
22
adipose tissue
22
tibial nerve
21
regulatory T cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
MCF-7
19
body of pancreas
caudate nucleus
19
epithelial cell of proximal tubule
19
pancreatic ductal cell
18
K562
18
foreskin keratinocyte
17
adipocyte
17
coronary artery
17
embryonic stem cell
17
glomerular endothelial cell
17
natural killer cell
17
right atrium auricular region
16
T cell
16
T-helper 1 cell
16
endothelial cell of hepatic sinusoid
16
foreskin fibroblast
16
pancreas
16
sigmoid colon
16
smooth muscle cell
16
substantia nigra
16
tibial artery
15
endothelial cell of umbilical vein
15
induced pluripotent stem cell
15
omental fat pad
15
trophoblast cell
14
cardiac muscle cell
14
frontal cortex
14
heart right ventricle
14
pancreatic acinar cell
14
pancreatic beta cell
14
testis
13
HepG2
13
cerebellum
13
gastrocnemius medialis
13
mesenchymal stem cell
13
ovary
13
pancreatic alpha cell
13
putamen
13
thyroid gland
13
upper lobe of left lung
12
ascending aorta
12
excitatory neuron
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
psoas muscle
12
retinal pigment epithelial cell
12
temporal lobe
12
transverse colon
11
prostate gland
10
Ammon's horn
10
CD8-positive, alpha-beta memory T cell
10
Rhabdomyosarcoma
10
chorionic villus
10
fibroblast of cardiac tissue
gastric cancer cell
10
glomerular visceral epithelial cell
10
keratinocyte
10
left cardiac atrium
10
mammary epithelial cell
10
muscle of trunk
10
pericyte cell
10
skeletal muscle myoblast
9
CD14-positive monocyte
9
CD4-positive, alpha-beta T cell
9
Peyer's patch
9
T-helper 2 cell
9
astrocyte
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus muscularis mucosa
9
hepatic stellate cell
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
mammary gland epithelial cell
9
mononuclear cell
9
neuronal stem cell
9
neurosphere
9
skeletal muscle satellite cell
9
skeletal muscle tissue
8
SK-N-DZ
8
T-helper 17 cell
8
aorta
8
esophagus squamous epithelium
8
kidney tubule cell
8
osteoblast
8
pancreatic delta cell
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
HeLa-S3
7
IMR-90
7
amygdala
7
breast epithelium
7
colonic mucosa
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
mature neutrophil
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD4-positive, alpha-beta memory T cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
SW480
6
angular gyrus
6
anterior cingulate cortex
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endocrine pancreas
6
endodermal cell
6
esophagus
6
foreskin melanocyte
6
globus pallidus
6
hESC cell
6
hypothalamus
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
nucleus accumbens
6
skin fibroblast
6
trophoblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
Organ
7
embryo
Life stage
unknown
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
annotation_type!
target gene predictions
biosample_term_name!
caudate nucleus
gastric cancer cell
relevant_life_stage!
unknown
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP