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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
1
chromatin state
Annotation Category
6
cis-regulatory elements
Annotation type Category
5
ATAC-seq
1
ChIP-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
cell line
5
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
70
heart
67
kidney
65
stomach
57
brain
51
lung
51
muscle of arm
46
CD8-positive, alpha-beta T cell
46
small intestine
45
adrenal gland
45
placenta
44
islet of Langerhans
44
muscle of leg
42
large intestine
42
neural progenitor cell
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
39
liver
37
B cell
37
endothelial cell
37
retina
34
hepatocyte
34
right lung
34
thymus
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
fibroblast
28
macrophage
27
heart left ventricle
27
left kidney
25
spleen
24
adipose tissue
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
adipocyte
23
spinal cord
22
epithelial cell of proximal tubule
22
tibial nerve
21
pancreatic ductal cell
21
subcutaneous adipose tissue
20
T-helper 1 cell
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
19
T cell
19
body of pancreas
19
caudate nucleus
19
smooth muscle cell
18
T-helper 17 cell
18
coronary artery
18
foreskin keratinocyte
17
right atrium auricular region
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
pancreas
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
omental fat pad
15
osteoblast
15
pancreatic beta cell
15
retinal pigment epithelial cell
15
trophoblast cell
14
T-helper 2 cell
14
ascending aorta
14
cerebellum
14
embryonic stem cell
14
excitatory neuron
14
foreskin fibroblast
14
frontal cortex
14
heart right ventricle
14
mesenchymal stem cell
14
pericyte cell
14
skeletal muscle myoblast
14
testis
13
astrocyte
13
gastrocnemius medialis
13
layer of hippocampus
13
mononuclear cell
13
ovary
13
pancreatic alpha cell
13
putamen
13
skeletal muscle tissue
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
cardiac muscle cell
12
chorionic villus
12
fibroblast of lung
12
keratinocyte
12
pancreatic acinar cell
12
psoas muscle
12
temporal lobe
12
transverse colon
11
Peyer's patch
11
cardiomyocytes
11
endocrine pancreas
11
left cardiac atrium
11
mammary epithelial cell
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neuronal stem cell
11
neutrophil
11
prostate gland
11
skeletal muscle satellite cell
10
Ammon's horn
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
muscle of trunk
10
pancreatic delta cell
9
aorta
9
erythroblast
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
9
extended pluripotent stem (EPS) cells
9
hepatic stellate cell
9
induced pluripotent stem cell
9
left renal pelvis
9
neurosphere
8
T-cell acute lymphoblastic leukemia
8
angular gyrus
8
breast epithelium
8
colonic mucosa
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
foreskin melanocyte
8
kidney tubule cell
8
mast cell
8
pancreatic stellate cell
8
progenitor cell of endocrine pancreas
8
right renal pelvis
8
skeletal muscle fiber
7
amygdala
7
chorion membrane
7
cingulate gyrus
7
duodenal mucosa
7
esophagus
7
eye
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
globus pallidus
7
hypothalamus
7
kidney glomerular epithelial cell
7
lower leg skin
7
mature neutrophil
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
CD1c-positive myeloid dendritic cell
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
choroid plexus epithelial cell
6
endodermal cell
6
endothelial cell of lymphatic vessel
6
enterocyte
6
epithelial cell of prostate
6
fibroblast of breast
6
gamma-delta T cell
6
gastroesophageal sphincter
6
kidney epithelial cell
6
kidney interstitial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
midbrain
6
neuroblastoma cell line
6
nucleus accumbens
6
trophoblast
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
Organ
5
connective tissue
1
embryo
Life stage
1
embryonic
Date released
5
November, 2022
1
August, 2017
Software used
5
macs
1
chromhmm
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
annotation_type!
target gene predictions
biosample_term_name!
AG09319 cell
biosample_type!
cell line
Showing 6 of 6 results
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Download
FileSet
DSR632VXG
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Proximal femoral growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956OYT
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Distal femoral growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR870XSB
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Proximal tibial growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR599ELD
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Distal tibial growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696CUX
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Acetabulum E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP