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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
stem cell
1
tissue
Biosample term
26
endothelial cell
25
fibroblast
19
macrophage
16
endothelial cell of hepatic sinusoid
15
kidney
15
smooth muscle cell
13
hepatocyte
12
excitatory neuron
12
pericyte cell
11
pancreatic acinar cell
11
pancreatic ductal cell
10
adipocyte
10
pancreatic alpha cell
10
pancreatic beta cell
9
pancreatic delta cell
9
skeletal muscle fiber
8
T cell
8
pancreatic stellate cell
7
B cell
7
astrocyte
7
induced pluripotent stem cell
6
endothelial cell of lymphatic vessel
6
enterocyte
6
natural killer cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
erythroblast
5
inhibitory neuron
5
left cardiac atrium
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
5
type II pneumocyte
4
basal cell
4
cartilage tissue
4
cortical cell of adrenal gland
4
endocardial cell
4
islet of Langerhans
4
keratinocyte
4
mesenchymal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
colon epithelial cell
3
glial cell
3
goblet cell
3
liver
3
mesothelial cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
3
type I pneumocyte
2
ESC derived cell line
2
EndoC_BH1
2
Muller cell
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
dendritic cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
hepatic stellate cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
neural cell
2
neuronal stem cell
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
regular ventricular cardiac myocyte
2
renal principal cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD4-positive, alpha-beta T cell
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
caudate nucleus
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cingulate gyrus
1
colon goblet cell
1
colonic mucosa
1
conventional dendritic cell
1
duodenal mucosa
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of lung
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
granulosa cell
1
hepatoblast
Organ
1
brain
1
embryo
Life stage
1
embryonic
Date released
2
August, 2017
Software used
2
chromhmm
Lab
AMP-T2D consortium
2
Stephen Parker, UMich
Project
2
AMP
RFA
2
AMP
annotation_type!
target gene predictions
lab.title!
AMP-T2D consortium
Showing 2 of 2 results
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Download
FileSet
TSTSR798820
released
Annotation file set
: ChromHMM 13-state model for Inferior temporal lobe
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP