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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
tsv
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
67
heart
64
stomach
60
kidney
56
brain
51
muscle of arm
50
lung
46
small intestine
45
placenta
44
adrenal gland
44
muscle of leg
42
large intestine
41
muscle of back
39
left lung
37
liver
35
retina
34
right lung
34
thymus
32
islet of Langerhans
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
left kidney
26
heart left ventricle
25
spleen
23
spinal cord
21
adipose tissue
20
pigmented layer of retina
17
pancreas
16
sigmoid colon
16
tibial nerve
14
caudate nucleus
14
ovary
14
testis
14
thyroid gland
14
transverse colon
13
body of pancreas
13
coronary artery
13
gastrocnemius medialis
13
heart right ventricle
13
layer of hippocampus
13
upper lobe of left lung
12
chorionic villus
12
muscle of trunk
12
prostate gland
12
psoas muscle
12
skeletal muscle tissue
12
tibial artery
11
Peyer's patch
11
endocrine pancreas
11
right atrium auricular region
11
subcutaneous adipose tissue
11
substantia nigra
11
temporal lobe
10
left cardiac atrium
10
left renal cortex interstitium
10
left renal pelvis
10
omental fat pad
10
right renal pelvis
9
ascending aorta
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
9
putamen
9
right renal cortex interstitium
9
thoracic aorta
8
angular gyrus
8
aorta
8
breast epithelium
8
cerebellum
8
colonic mucosa
8
frontal cortex
8
lower leg skin
8
trophoblast
7
chorion membrane
7
cingulate gyrus
7
duodenal mucosa
7
esophagus
7
eye
7
globus pallidus
7
midbrain
7
mucosa of rectum
7
parathyroid adenoma
7
stomach smooth muscle
7
tongue
7
vagina
6
gastroesophageal sphincter
6
limb
6
muscle layer of colon
6
muscle layer of duodenum
6
occipital lobe
6
subcutaneous abdominal adipose tissue
6
superior temporal gyrus
6
urinary bladder
6
uterus
5
Ammon's horn
5
cartilage tissue
5
medulla oblongata
5
middle frontal gyrus
5
pons
5
right cardiac atrium
5
skin of body
5
umbilical cord
4
Brodmann (1909) area 46
4
cerebellar cortex
4
cortex of kidney
4
germinal matrix
3
amnion
3
embryonic facial prominence
3
femur
3
inferior parietal cortex
3
mucosa of stomach
3
prefrontal cortex
3
rectum smooth muscle tissue
3
right lobe of liver
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
amygdala
2
arm bone
2
blood
2
breast carcinoma
2
chorion
2
endometrium cancer
2
first pancreatic bud
2
forelimb muscle
2
germinal center
2
hypothalamus
2
kidney epithelium
2
leg bone
2
mammary gland
2
middle frontal area 46
2
nucleus accumbens
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
breast
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cerebrospinal fluid
1
circle of Willis
1
claustrum of brain
1
colon
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus mucosa
1
fallopian tube
1
fetal heart
1
frontal pole
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
minor salivary gland
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
Organ
4
brain
Life stage
4
adult
Date released
2
September, 2022
1
February, 2021
1
January, 2020
Software used
1
chromhmm
1
encode-ccres
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
target gene predictions
files.file_type!
tsv
Showing 4 of 4 results
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Download
FileSet
DSR595ZZM
released
Annotation file set
: Candidate regulatory elements for BSS00201 cerebellar cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323JTR
released
Annotation file set
: Chromatin states for BSS00201 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR891ASN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cerebellar cortex
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR057KHC
released
Annotation file set
: Accessible chromatin annotation of brain cerebellar cortex from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP