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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
DNase-seq
1
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
128
monocyte
45
CD8-positive, alpha-beta T cell
32
endothelial cell
28
hepatocyte
25
fibroblast
25
macrophage
20
epithelial cell of proximal tubule
18
glomerular endothelial cell
18
regulatory T cell
16
endothelial cell of hepatic sinusoid
16
pancreatic ductal cell
14
B cell
14
T-helper 1 cell
14
common myeloid progenitor, CD34-positive
14
pancreatic beta cell
14
smooth muscle cell
13
osteoblast
13
pancreatic acinar cell
13
pancreatic alpha cell
12
CD4-positive, alpha-beta T cell
12
T-helper 17 cell
12
endothelial cell of umbilical vein
12
excitatory neuron
12
foreskin fibroblast
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
astrocyte
11
pancreatic delta cell
10
T cell
10
natural killer cell
10
pericyte cell
10
skeletal muscle myoblast
9
erythroblast
9
mature neutrophil
9
skeletal muscle fiber
9
skeletal muscle satellite cell
8
T-helper 2 cell
8
glomerular visceral epithelial cell
8
keratinocyte
8
neutrophil
7
foreskin keratinocyte
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic stellate cell
7
retinal pigment epithelial cell
6
bronchial epithelial cell
6
cardiac muscle cell
6
enterocyte
6
fibroblast of lung
6
gamma-delta T cell
6
glutamatergic neuron
6
hepatic stellate cell
6
peripheral blood mononuclear cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
T-cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
basal cell
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
cortical cell of adrenal gland
4
dermis blood vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
kidney tubule cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal epithelial cell
4
vascular associated smooth muscle cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
adult endothelial progenitor cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
epithelial cell of esophagus
3
erythroid cell
3
foreskin melanocyte
3
gabaergic neuron
3
glial cell
3
goblet cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
Organ
3
brain
Life stage
1
unknown
Date released
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
1
deltasvm
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
target gene predictions
biosample_term_name!
Intercalated Cell Type A
month_released!
September, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR152JXW
released
Annotation file set
: Accessible chromatin annotation of brain hippocampus astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP