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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
2
candidate regulatory elements
1
chromatin state
target gene predictions
Annotation Category
4
Gene expression levels
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
snDropSeq
2
DNase-seq
1
scRNA-seq
Available data
4
tsv
4
txt
2
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
40
common myeloid progenitor, CD34-positive
27
B cell
23
CD4-positive, alpha-beta memory T cell
23
monocyte
21
epithelial cell of proximal tubule
19
T-helper 1 cell
19
regulatory T cell
18
T-helper 17 cell
18
glomerular endothelial cell
17
hepatocyte
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
T-helper 2 cell
14
endothelial cell
14
endothelial cell of umbilical vein
14
macrophage
14
natural killer cell
13
CD8-positive, alpha-beta T cell
13
T cell
13
mononuclear cell
12
CD14-positive monocyte
12
fibroblast of lung
11
CD4-positive, alpha-beta T cell
11
skeletal muscle myoblast
11
trophoblast cell
10
neurosphere
10
neutrophil
9
fibroblast
9
foreskin fibroblast
9
naive thymus-derived CD4-positive, alpha-beta T cell
8
dermis blood vessel endothelial cell
8
fibroblast of dermis
8
glomerular visceral epithelial cell
7
keratinocyte
7
kidney loop of Henle thin ascending limb epithelial cell
7
mammary gland epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic delta cell
7
pancreatic ductal cell
6
bronchial epithelial cell
6
epithelial cell of prostate
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
kidney interstitial cell
6
kidney tubule cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
osteoblast
6
skeletal muscle satellite cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
kidney cortex collecting duct principal cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mammary epithelial cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
pancreatic stellate cell
5
renal cortical epithelial cell
5
smooth muscle cell
4
T-cell
4
astrocyte
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of hepatic sinusoid
4
erythroblast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of the aortic adventitia
4
fibroblast of villous mesenchyme
4
hepatic stellate cell
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
lung microvascular endothelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
peripheral blood mononuclear cell
4
retinal pigment epithelial cell
4
skeletal muscle cell
4
skeletal muscle fiber
4
skin fibroblast
4
smooth muscle cell of the brain vasculature
4
vascular associated smooth muscle cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
adult endothelial progenitor cell
3
astrocyte of the spinal cord
3
basal cell
3
blood cell
3
brain microvascular endothelial cell
3
enterocyte
3
fibroblast of gingiva
3
fibroblast of peridontal ligament
3
fibroblast of the conjunctiva
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
naive B cel
3
naive B cell
3
naive regulatory T cell
3
non-pigmented ciliary epithelial cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
pericyte cell
3
pulmonary artery endothelial cell
3
stromal cell of bone marrow
3
type I muscle cell
Organ
4
epithelium
4
kidney
3
spinal cord
Life stage
4
adult
3
unknown
Date released
4
February, 2021
2
September, 2022
1
August, 2021
Software used
5
r
1
chromhmm
1
encode-ccres
macs
1
seurat
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
annotation_type!
target gene predictions
software_used.software.name!
macs
Showing 7 of 7 results
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Download
FileSet
DSR081MBE
released
Annotation file set
: Candidate regulatory elements for BSS00092 astrocyte of the spinal cord from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR755QZV
released
Annotation file set
: Chromatin states for BSS00092 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR926ZNY
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683CUH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR149YFI
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for kidney distal convoluted tubule epithelial cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR693SGT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the spinal cord
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR919NVL
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP