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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
48
heart
46
kidney
45
stomach
40
brain
35
muscle of arm
34
lung
33
retina
31
muscle of leg
31
placenta
31
small intestine
30
adrenal gland
30
islet of Langerhans
29
large intestine
29
liver
28
muscle of back
26
left lung
23
right lung
23
thymus
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
heart left ventricle
20
pigmented layer of retina
19
spleen
18
left kidney
17
tibial nerve
16
spinal cord
16
subcutaneous adipose tissue
15
adipose tissue
15
caudate nucleus
15
coronary artery
15
pancreas
14
tibial artery
13
body of pancreas
13
right atrium auricular region
13
substantia nigra
12
omental fat pad
12
putamen
11
ascending aorta
11
sigmoid colon
11
testis
10
cerebellum
10
frontal cortex
10
heart right ventricle
10
layer of hippocampus
10
ovary
10
prostate gland
10
thyroid gland
10
transverse colon
10
upper lobe of left lung
9
gastrocnemius medialis
9
left cardiac atrium
9
skeletal muscle tissue
9
temporal lobe
8
Ammon's horn
8
Peyer's patch
8
chorionic villus
8
left renal cortex interstitium
8
left renal pelvis
8
muscle of trunk
8
psoas muscle
8
right renal pelvis
7
endocrine pancreas
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
right renal cortex interstitium
7
thoracic aorta
6
amygdala
6
angular gyrus
6
aorta
6
breast epithelium
6
colonic mucosa
6
globus pallidus
6
hypothalamus
6
lower leg skin
6
midbrain
6
nucleus accumbens
6
right lobe of liver
6
subcutaneous abdominal adipose tissue
6
trophoblast
5
anterior cingulate cortex
5
cartilage tissue
5
cerebellum (Hemisphere)
5
cingulate gyrus
5
duodenal mucosa
5
esophagus
5
eye
5
gastroesophageal sphincter
5
mucosa of rectum
5
occipital lobe
5
parathyroid adenoma
5
stomach smooth muscle
5
superior temporal gyrus
5
tongue
5
uterus
5
vagina
4
C1 segment of cervical spinal cord
4
chorion membrane
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
4
limb
4
medulla oblongata
4
middle frontal gyrus
4
muscle layer of colon
4
muscle layer of duodenum
4
pons
4
right cardiac atrium
4
skin of body
4
umbilical cord
4
urinary bladder
3
cerebellar cortex
3
germinal matrix
3
prefrontal cortex
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
Brodmann (1909) area 46
2
amnion
2
blood
2
breast carcinoma
2
chorion
2
embryonic facial prominence
2
endometrium cancer
2
femur
2
first pancreatic bud
2
forelimb muscle
2
inferior parietal cortex
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
mucosa of stomach
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
2
visceral abdominal adipose tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
arcuate nucleus of hypothalamus
1
arm bone
1
bed nucleus of stria terminalis
1
breast
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
circle of Willis
1
claustrum of brain
1
colon
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus mucosa
1
fallopian tube
1
fetal heart
1
frontal pole
1
germinal center
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
left leg bone
1
leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
minor salivary gland
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
Organ
3
brain
Life stage
3
adult
Date released
1
February, 2021
1
January, 2020
1
September, 2022
Software used
1
chromhmm
1
encode-ccres
1
macs
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
target gene predictions
files.file_type!
bam
software_used.software.name!
r
Showing 3 of 3 results
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Download
FileSet
DSR323JTR
released
Annotation file set
: Chromatin states for BSS00201 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR891ASN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cerebellar cortex
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR057KHC
released
Annotation file set
: Accessible chromatin annotation of brain cerebellar cortex from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP