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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
70
heart
67
kidney
65
stomach
57
brain
51
lung
51
muscle of arm
46
small intestine
45
adrenal gland
45
neural progenitor cell
44
muscle of leg
43
A549
43
islet of Langerhans
42
large intestine
41
muscle of back
39
left lung
39
liver
37
retina
34
right lung
34
thymus
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
heart left ventricle
27
left kidney
27
spinal cord
25
spleen
23
adipose tissue
22
EndoC_BH1
22
tibial nerve
21
subcutaneous adipose tissue
20
MCF-7
20
breast cancer cell
20
pigmented layer of retina
19
body of pancreas
19
caudate nucleus
18
K562
17
coronary artery
17
right atrium auricular region
16
embryonic stem cell
16
pancreas
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
H1-hESC
15
adipocyte
15
induced pluripotent stem cell
15
omental fat pad
14
HepG2
14
frontal cortex
14
heart right ventricle
14
testis
13
cerebellum
13
gastrocnemius medialis
13
ovary
13
putamen
13
skeletal muscle tissue
13
thyroid gland
13
upper lobe of left lung
12
ascending aorta
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
psoas muscle
12
temporal lobe
12
transverse colon
11
Peyer's patch
11
prostate gland
10
Ammon's horn
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
chorionic villus
10
gastric cancer cell
10
left cardiac atrium
10
muscle of trunk
10
progenitor cell of endocrine pancreas
9
HeLa-S3
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
esophagus muscularis mucosa
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
aorta
8
esophagus squamous epithelium
8
right renal pelvis
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
HL-60
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
amygdala
7
breast epithelium
7
colonic mucosa
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
OCI-LY7
6
PC-3
6
PC-9
6
Rh-4 cell
6
SGBS preadipocytes
6
SW480
6
angular gyrus
6
anterior cingulate cortex
6
chondrocyte
6
cingulate gyrus
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
globus pallidus
6
hESC cell
6
hypothalamus
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic ductal cell
6
trophoblast
5
C1 segment of cervical spinal cord
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
NT2-D1 cell
5
OCI-LY1
5
RPMI8226
5
RWPE1
5
SJSA1
5
SK-N-SH
5
T47D
5
WERI-Rb-1
5
cardiac precursors (cardiac muscle cell)
5
immortal human breast epithelial cell line cell
5
limb
5
mesenchymal stem cell
5
middle frontal gyrus
5
muscle layer of duodenum
5
neuronal stem cell
5
occipital lobe
5
osteosarcoma
5
parathyroid adenoma
5
prostate cancer cell line
5
skin of body
5
stomach smooth muscle
5
urinary bladder
5
uterus
5
vagina
4
A172
4
ACHN
4
B cell
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
Organ
2
epithelium
Date released
1
February, 2024
1
May, 2021
Software used
1
macs
1
r
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
annotation_type!
target gene predictions
biosample_term_name!
heart left ventricle
biosample_type!
primary cell
organ_slims!
placenta
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP