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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
46
small intestine
42
large intestine
16
sigmoid colon
14
transverse colon
11
Peyer's patch
8
colonic mucosa
7
duodenal mucosa
7
mucosa of rectum
6
HT-29
6
SW480
6
enterocyte
6
muscle layer of colon
6
muscle layer of duodenum
5
colon epithelial cell
4
RKO
3
HCT-116 cell
3
HCT116
3
olfactory neurosphere cell line
3
rectum smooth muscle tissue
2
enteric smooth muscle cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
enterocyte of epithelium of small intestine
1
intestinal epithelial cell
1
intestinal epithelium
1
paneth cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
small intestine goblet cell
Organ
2
intestine
0
nose
Date released
2
November, 2021
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
annotation_type!
target gene predictions
organ_slims!
thymus
Showing 2 of 2 results
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Download
FileSet
DSR300AWQ
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR441RLT
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE