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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
histone modifications
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
107
monocyte
41
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
23
endothelial cell
23
fibroblast
20
B cell
16
hepatocyte
16
macrophage
14
CD4-positive, alpha-beta memory T cell
13
foreskin fibroblast
13
smooth muscle cell
12
T cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
mammary epithelial cell
12
osteoblast
12
regulatory T cell
11
astrocyte
11
endothelial cell of umbilical vein
11
foreskin keratinocyte
11
pericyte cell
10
keratinocyte
10
natural killer cell
10
skeletal muscle myoblast
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
fibroblast of lung
9
pancreatic beta cell
9
pancreatic ductal cell
9
trophoblast cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
bronchial epithelial cell
8
mononuclear cell
8
pancreatic alpha cell
8
retinal pigment epithelial cell
7
T-helper 17 cell
7
T-helper 2 cell
7
erythroblast
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neurosphere
7
skeletal muscle fiber
7
skeletal muscle satellite cell
6
cardiac muscle cell
6
dermis blood vessel endothelial cell
6
enterocyte
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
glutamatergic neuron
6
mammary gland epithelial cell
6
neutrophil
6
pancreatic acinar cell
6
pancreatic delta cell
6
peripheral blood mononuclear cell
5
cardiac fibroblast
5
CD1c-positive myeloid dendritic cell
5
choroid plexus epithelial cell
5
epithelial cell of proximal tubule
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
hepatic stellate cell
5
inhibitory neuron
5
kidney tubule cell
5
mesenchymal stem cell
5
myofibroblast cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
5
type II pneumocyte
4
T-cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
basal cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
epithelial cell of esophagus
4
epithelial cell of prostate
4
fibroblast of breast
4
foreskin melanocyte
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
mast cell
4
memory B cell
4
myoepithelial cell of mammary gland
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
skin fibroblast
4
smooth muscle cell of the brain vasculature
3
CD4-positive helper T cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
adipocyte
3
bone marrow cell
3
brain microvascular endothelial cell
3
brain pericyte
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
erythroid cell
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
gabaergic neuron
3
goblet cell
3
iris pigment epithelial cell
3
luminal epithelial cell of mammary gland
3
lung microvascular endothelial cell
3
mesothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
pancreatic polypeptide-secreting cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
type I pneumocyte
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
astrocyte of the spinal cord
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
columnar chondrocyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
glial cell
2
head and neck squamous cell carcinoma
2
kidney capillary endothelial cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mature natural killer cell
2
mature neutrophil
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
naive regulatory T cell
2
naive t cell
2
neuron
2
neuronal stem cell
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic endocrine cell
2
pancreatic stellate cell
2
parietal cell
2
peptic cell
2
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
schwann cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
stromal cell of bone marrow
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
Organ
1
epithelium
Date released
1
February, 2021
1
November, 2021
Software used
2
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
annotation_type!
target gene predictions
Showing 2 of 2 results
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Download
FileSet
DSR629RBK
released
Annotation file set
: Accessible chromatin annotation of Enterochromaffin Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR627JAL
released
Annotation file set
: Histone modifications annotation for Others Bladder_cancer from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP