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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
gene expression
1
histone modifications
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
128
monocyte
43
islet of Langerhans
39
CD8-positive, alpha-beta T cell
37
neural progenitor cell
34
endothelial cell
28
hepatocyte
28
macrophage
28
retina
27
fibroblast
24
kidney
22
EndoC_BH1
22
pancreatic ductal cell
20
breast cancer cell
20
pigmented layer of retina
19
epithelial cell of proximal tubule
19
liver
19
subcutaneous adipose tissue
17
embryonic stem cell
17
glomerular endothelial cell
16
endothelial cell of hepatic sinusoid
16
regulatory T cell
15
adipocyte
15
induced pluripotent stem cell
14
pancreatic acinar cell
14
pancreatic beta cell
14
smooth muscle cell
13
H1-hESC
13
excitatory neuron
13
heart
13
pancreatic alpha cell
12
B cell
12
coronary artery
12
lymphoblastoid cell line
12
neuroblastoma cell
12
retinal pigment epithelial cell
11
T cell
11
T-helper 1 cell
11
brain
11
osteoblast
11
right atrium auricular region
11
tibial nerve
10
Rhabdomyosarcoma
10
caudate nucleus
10
frontal cortex
10
gastric cancer cell
10
keratinocyte
10
pericyte cell
10
progenitor cell of endocrine pancreas
9
T-helper 17 cell
9
adipose tissue
9
astrocyte
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart left ventricle
9
liposarcoma
9
natural killer cell
9
pancreas
9
putamen
9
tibial artery
8
glomerular visceral epithelial cell
8
mesenchymal stem cell
8
pancreatic delta cell
8
pancreatic stellate cell
8
skeletal muscle fiber
8
skeletal muscle satellite cell
7
Ammon's horn
7
B-lymphoblastoid cell line
7
HepG2
7
amygdala
7
ascending aorta
7
cardiac muscle cell
7
cerebellum
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
hepatic stellate cell
7
left cardiac atrium
7
mature neutrophil
7
substantia nigra
6
Chondroid Chordoma
6
MCF-7
6
Rh-4 cell
6
SGBS preadipocytes
6
anterior cingulate cortex
6
chondrocyte
6
endothelial cell of umbilical vein
6
foreskin fibroblast
6
hESC cell
6
hypothalamus
6
mammary epithelial cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neuronal stem cell
6
nucleus accumbens
6
omental fat pad
6
skeletal muscle myoblast
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Jurkat
5
K562
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
body of pancreas
5
cardiac precursors (cardiac muscle cell)
5
enterocyte
5
fibroblast of cardiac tissue
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
smooth muscle cell of the coronary artery
5
stomach
5
type I muscle cell
4
A549
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD4-positive, alpha-beta T cell
4
COLO205
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
IMR-90
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NHEK
4
NT2-D1 cell
4
PANC-1 cell
4
Principal Cell
4
Proximal Tubule Epithelial Cell Segment 1 and 2
Date released
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
encode-ccres
3
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
target gene predictions
biosample_term_name!
skin fibroblast
month_released!
September, 2022
software_used.software.name!
encode-ccres
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR782OVI
released
Annotation file set
: Gene expression annotation of multipotent stem cell_multipotent cardiac progenitor (MCP) PDGFRA+ISL1+ on day 3 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR383WGV
released
Annotation file set
: Histone modifications annotation for Blood Hematopoietic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR818RAD
released
Annotation file set
: Binding sites annotation for Blood Hematopoietic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365ACB
released
Annotation file set
: Accessible chromatin annotation for Blood Hematopoietic Stem Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP