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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
40
in vitro differentiated cells
7
primary cell
Biosample term
113
monocyte
42
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
31
B cell
28
fibroblast
27
endothelial cell
26
macrophage
23
CD4-positive, alpha-beta memory T cell
22
hepatocyte
18
T cell
17
natural killer cell
17
regulatory T cell
16
endothelial cell of umbilical vein
16
smooth muscle cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
foreskin fibroblast
14
mononuclear cell
14
pericyte cell
14
skeletal muscle myoblast
13
T-helper 1 cell
13
osteoblast
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
astrocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of lung
12
keratinocyte
12
mammary epithelial cell
12
neutrophil
11
T-helper 17 cell
11
T-helper 2 cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic ductal cell
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
neurosphere
10
pancreatic beta cell
9
erythroblast
9
mammary gland epithelial cell
9
mature neutrophil
9
pancreatic alpha cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
hepatic stellate cell
8
kidney tubule cell
8
pancreatic acinar cell
7
epithelial cell of proximal tubule
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
mast cell
7
mesenchymal stem cell
7
pancreatic delta cell
7
renal cortical epithelial cell
6
CD1c-positive myeloid dendritic cell
6
adipocyte
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
endothelial cell of lymphatic vessel
6
enterocyte
6
epithelial cell of prostate
6
fibroblast of breast
6
glomerular visceral epithelial cell
6
glutamatergic neuron
6
kidney epithelial cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skin fibroblast
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inhibitory neuron
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type II pneumocyte
4
T-cell
4
acute myeloid leukemia cell
4
alternatively activated macrophage
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
basal cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
dermis lymphatic vessel endothelial cell
4
endocardial cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
memory B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
3
CD4-positive helper T cell
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
astrocyte of the spinal cord
3
blood cell
3
bone marrow cell
3
brain pericyte
3
colon epithelial cell
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
gabaergic neuron
3
glial cell
3
goblet cell
3
inflammatory macrophage
3
leukocyte
3
mesangial cell
3
mesothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
neoplastic cell
3
pancreatic stellate cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
3
type I pneumocyte
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
enteric neuron
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
2
microglial cell
2
naive regulatory T cell
2
naive t cell
2
neural cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic endocrine cell
2
parietal cell
2
peptic cell
Organ
7
connective tissue
Life stage
2
adult
1
unknown
Date released
3
February, 2024
1
February, 2021
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
annotation_type!
target gene predictions
files.file_type!
tsv
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP