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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
127
monocyte
42
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
26
B cell
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
21
epithelial cell of proximal tubule
20
T-helper 1 cell
19
glomerular endothelial cell
18
hepatocyte
17
T-helper 17 cell
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin keratinocyte
15
osteoblast
14
T-helper 2 cell
14
foreskin fibroblast
14
mononuclear cell
13
natural killer cell
13
skeletal muscle myoblast
13
trophoblast cell
12
CD14-positive monocyte
12
neutrophil
11
CD4-positive, alpha-beta T cell
11
fibroblast of lung
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
T cell
10
bronchial epithelial cell
10
endothelial cell
10
neurosphere
9
glomerular visceral epithelial cell
9
macrophage
9
mature neutrophil
8
dermis blood vessel endothelial cell
8
fibroblast of dermis
8
keratinocyte
8
kidney tubule cell
8
retinal pigment epithelial cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
hepatic stellate cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mammary gland epithelial cell
7
pancreatic ductal cell
7
renal cortical epithelial cell
6
CD1c-positive myeloid dendritic cell
6
astrocyte
6
choroid plexus epithelial cell
6
epithelial cell of prostate
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
kidney epithelial cell
6
kidney interstitial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skeletal muscle satellite cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
foreskin melanocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
pancreatic beta cell
5
skeletal muscle cell
5
skin fibroblast
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
alternatively activated macrophage
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
erythroblast
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
glutamatergic neuron
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
lung microvascular endothelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic alpha cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
3
Ishikawa
3
S-shaped body
3
Th1 cell
3
Th17 cell
3
adult endothelial progenitor cell
3
astrocyte of the spinal cord
3
blood cell
3
bone marrow cell
3
brain pericyte
3
epithelial cell of esophagus
3
erythroid cell
3
fibroblast
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
inflammatory macrophage
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mast cell
3
mesenchymal stem cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive B cell
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
head and neck squamous cell carcinoma
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary stem cell
2
mantle cell lymphoma cell
2
myeloid dendritic cell
2
neuronal stem cell
2
pancreatic polypeptide-secreting cell
2
pericyte cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
renal proximal tubule cell
2
renal vesicle
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
somatic muscle myotube
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-1a B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Schwann cell
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
Life stage
2
adult
Date released
2
September, 2022
Software used
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
target gene predictions
biosample_term_name!
hepatic stellate cell
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR029CGI
released
Annotation file set
: Candidate regulatory elements for BSS01216 mammary stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR506MWQ
released
Annotation file set
: Chromatin states for BSS01216 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP