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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
1
Homo sapiens
Biosample type
2
primary cell
Biosample term
128
monocyte
45
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
35
endothelial cell
33
B cell
31
hepatocyte
28
fibroblast
28
macrophage
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
20
T-helper 1 cell
20
glomerular endothelial cell
19
natural killer cell
18
T cell
18
T-helper 17 cell
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
pancreatic ductal cell
16
smooth muscle cell
15
CD8-positive, alpha-beta memory T cell
15
osteoblast
15
pancreatic beta cell
14
T-helper 2 cell
14
mononuclear cell
14
pancreatic alpha cell
14
pericyte cell
14
skeletal muscle myoblast
13
astrocyte
13
pancreatic acinar cell
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
fibroblast of lung
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neutrophil
12
pancreatic delta cell
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
neurosphere
9
erythroblast
9
hepatic stellate cell
9
mammary gland epithelial cell
9
mature neutrophil
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
fibroblast of cardiac tissue
8
kidney tubule cell
8
mast cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic stellate cell
7
renal cortical epithelial cell
6
CD1c-positive myeloid dendritic cell
6
adipocyte
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
endothelial cell of lymphatic vessel
6
enterocyte
6
epithelial cell of prostate
6
fibroblast of breast
6
gamma-delta T cell
6
glutamatergic neuron
6
kidney epithelial cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type II pneumocyte
4
T-cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
basal cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endocardial cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
vascular associated smooth muscle cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
Date released
1
January, 2021
1
May, 2020
Software used
1
macs
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
annotation_type!
target gene predictions
organ_slims!
skin of body
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR260WKD
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR321ZSO
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal plasmacytoid dendritic cell
Lab:
AMP-T2D consortium
Project:
AMP