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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
variant allelic effects
Annotation Category
1
cis-regulatory elements
Annotation type Category
ATAC-seq
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
115
monocyte
53
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
30
endothelial cell
26
regulatory T cell
24
hepatocyte
24
macrophage
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
21
T-helper 1 cell
20
T cell
20
glomerular endothelial cell
20
mononuclear cell
19
T-helper 17 cell
19
fibroblast
19
foreskin keratinocyte
19
natural killer cell
18
endothelial cell of umbilical vein
17
trophoblast cell
16
CD14-positive monocyte
15
T-helper 2 cell
15
fibroblast of lung
15
foreskin fibroblast
15
neutrophil
15
pancreatic alpha cell
15
pancreatic beta cell
15
pancreatic ductal cell
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
osteoblast
14
pancreatic delta cell
13
astrocyte
13
keratinocyte
13
neurosphere
13
pericyte cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
mammary epithelial cell
12
pancreatic acinar cell
12
skeletal muscle satellite cell
12
smooth muscle cell
11
fibroblast of cardiac tissue
11
fibroblast of dermis
11
mammary gland epithelial cell
10
dermis blood vessel endothelial cell
10
erythroblast
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
mature neutrophil
9
naive T cell
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle fiber
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
foreskin melanocyte
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
kidney interstitial cell
6
memory B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
cardiac muscle cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mast cell
4
megakaryocyte
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
renal epithelial cell
4
stromal cell of bone marrow
4
type II pneumocyte
3
cardiac fibroblast
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
Organ
1
epithelium
1
thyroid gland
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_type!
variant allelic effects
annotation_type_category!
ATAC-seq
month_released!
November, 2019
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR356XOM
released
Annotation file set
: Accessible chromatin annotation of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE