Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
gene expression
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
snATAC-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
9
in vitro differentiated cells
5
primary cell
Biosample term
41
monocyte
37
endothelial cell
28
macrophage
25
fibroblast
24
hepatocyte
21
pericyte cell
20
smooth muscle cell
17
epithelial cell of proximal tubule
17
pancreatic beta cell
16
glomerular endothelial cell
16
pancreatic alpha cell
15
CD14-positive monocyte
15
pancreatic acinar cell
15
pancreatic delta cell
15
pancreatic ductal cell
15
regulatory T cell
13
B cell
12
CD8-positive, alpha-beta T cell
12
astrocyte
12
excitatory neuron
11
T-helper 1 cell
11
natural killer cell
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
8
T cell
8
glutamatergic neuron
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
8
pancreatic stellate cell
skeletal muscle satellite cell
7
endothelial cell of lymphatic vessel
7
erythroblast
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
skeletal muscle fiber
7
type I muscle cell
7
type II muscle cell
6
T-helper 2 cell
6
colon epithelial cell
6
gamma-delta T cell
6
mast cell
6
naive B cell
6
olfactory receptor cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
central memory CD8-positive, alpha-beta T cell
5
cortical cell of adrenal gland
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
gabaergic neuron
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesenchymal stem cell
5
neutrophil
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
4
CD4-positive, alpha-beta T cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
cardiac fibroblast
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
activated CD8-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
cholangiocyte
3
ciliated cell
3
club cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
glial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mesothelial cell
3
microglial cell
3
naive B cel
3
naive regulatory T cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
schwann cell
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
type B pancreatic cell
2
Kupffer cell
2
Muller cell
2
T-cell
2
acute myeloid leukemia cell
2
alternatively activated macrophage
2
alveolar macrophage
2
aortic endothelial cell
2
articular chondrocyte
2
basal cell of epidermis
2
bone marrow cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
colon goblet cell
2
conventional dendritic cell
2
dendritic cell
Disease term
2
heart failure
Organ
5
connective tissue
Life stage
2
adult
Date released
2
February, 2024
2
May, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Kyle Gaulton, UCSD
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP2
1
ENCODE3
annotation_type!
variant allelic effects
annotation_type_category!
ChIP-seq
biosample_term_name!
skeletal muscle satellite cell
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP