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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
accessible chromatin
1
gene expression
variant allelic effects
Annotation Category
4
Target gene links
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
ATAC-seq
ChIP-seq
4
DNase-seq
4
H3K27ac ChIP-Seq
2
snATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
primary cell
Biosample term
28
endothelial cell
20
fibroblast
19
pericyte cell
17
smooth muscle cell
16
macrophage
15
CD14-positive monocyte
15
kidney
13
hepatocyte
13
pancreatic acinar cell
13
pancreatic ductal cell
12
excitatory neuron
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
10
astrocyte
10
endothelial cell of hepatic sinusoid
10
pituitary stalk
9
pancreatic stellate cell
8
induced pluripotent stem cell
7
CD8-positive, alpha-beta T cell
7
adipocyte
7
dendritic cell
7
skeletal muscle fiber
6
T cell
6
colon epithelial cell
6
erythroblast
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
B cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cortical cell of adrenal gland
5
inhibitory neuron
5
keratinocyte
5
mesenchymal stem cell
5
natural killer cell
5
pancreatic endothelial cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
luminal epithelial cell of mammary gland
4
memory B cell
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
glial cell
3
liver
3
megakaryocyte
3
mesothelial cell
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
schwann cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
subcutaneous adipose tissue
2
thyroid follicular cell
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
Organ
7
connective tissue
Date released
4
May, 2021
2
February, 2024
1
November, 2021
Software used
4
abc
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
AMP-T2D consortium
4
Jesse Engreitz, Stanford University
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
6
AMP
1
ENCODE
RFA
4
AMP
2
AMP2
1
ENCODE3
annotation_type!
variant allelic effects
annotation_type_category!
ChIP-seq
biosample_term_name!
skeletal muscle satellite cell
lab.title!
AMP-T2D consortium
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP