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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
eQTL
1
gene expression
1
target gene predictions
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
ChIP-seq
60
DNase-seq
3
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
38
islet of Langerhans
36
endothelial cell
27
macrophage
25
retina
23
hepatocyte
22
fibroblast
20
EndoC_BH1
20
pancreatic ductal cell
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
19
smooth muscle cell
18
K562
18
kidney
18
neural progenitor cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
liver
17
pancreatic beta cell
17
subcutaneous adipose tissue
16
glomerular endothelial cell
16
pancreatic acinar cell
16
pancreatic alpha cell
15
CD14-positive monocyte
15
pancreatic delta cell
15
regulatory T cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
12
B cell
12
adipocyte
12
astrocyte
11
T-helper 1 cell
11
adipose tissue
11
cardiomyocytes
11
coronary artery
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic stellate cell
10
pituitary stalk
10
right atrium auricular region
10
tibial nerve
9
T cell
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
heart
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
natural killer cell
9
omental fat pad
9
pancreas
9
progenitor cell of endocrine pancreas
9
putamen
9
retinal pigment epithelial cell
9
tibial artery
8
Ammon's horn
8
GM12878
8
caudate nucleus
8
cerebellum
8
embryonic stem cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
8
skeletal muscle satellite cell
7
H9
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
erythroblast
7
heart left ventricle
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mesangial cell
7
skeletal muscle fiber
7
stomach
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
ascending aorta
6
colon epithelial cell
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
spleen
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain
5
cardiac precursors (cardiac muscle cell)
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
cortical cell of adrenal gland
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
inhibitory neuron
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
neutrophil
5
ovary
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
psoas muscle
5
right lobe of liver
5
smooth muscle cell of the coronary artery
5
type II pneumocyte
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
heart right ventricle
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mature natural killer cell
Organ
5
brain
1
musculature of body
Life stage
2
fetal
Date released
2
January, 2022
1
February, 2020
1
January, 2020
1
June, 2020
1
May, 2021
Software used
2
macs
2
qTLtools
1
abc
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
variant allelic effects
annotation_type_category!
ChIP-seq
organ_slims!
spinal cord
Showing 6 of 6 results
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR764OIT
released
Annotation file set
: enhancer-gene predicton of muscle_of_trunk_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP