Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
gene expression
1
candidate regulatory elements
variant allelic effects
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
snDropSeq
3
DNase-seq
1
ChIP-seq
1
RNA-seq
1
scRNA-seq
Available data
2
bed bed3+
1
bigWig
1
tsv
1
txt
File set status
5
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
38
kidney
12
renal cortex interstitium
12
renal pelvis
11
right kidney
9
left kidney
6
HEK293
6
glomerular visceral epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
epithelial cell of proximal tubule
5
glomerular endothelial cell
5
left renal cortex interstitium
5
left renal pelvis
5
right renal pelvis
4
cortex of kidney
4
kidney glomerular epithelial cell
4
kidney interstitial cell
4
kidney tubule cell
4
renal cortical epithelial cell
4
right renal cortex interstitium
3
S-shaped body
3
kidney epithelial cell
2
ACHN
2
Caki2
2
RCC 7860
2
kidney distal convoluted tubule epithelial cell
2
kidney epithelium
2
metanephros
2
renal cell carcinoma
2
renal connecting tubule
2
renal principal cell
2
ureteric bud
1
G401
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney capillary endothelial cell
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle descending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
Organ
5
epithelium
5
kidney
Life stage
1
adult
1
fetal
1
unknown
Date released
September, 2022
1
August, 2021
1
February, 2020
1
February, 2021
1
January, 2020
1
June, 2020
Software used
2
macs
2
r
1
encode-ccres
1
seurat
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
4
AMP
1
AMP2
annotation_type!
variant allelic effects
annotation_type_category!
snDropSeq
month_released!
September, 2022
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR857ORD
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for glomerular endothelial cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR267ZHH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR558AVP
released
Annotation file set
: Gene expression levels of Kidney glomerular endothelial cell from RNA-seq (ENCODE) fetal
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549KDR
released
Annotation file set
: Accessible chromatin annotation of kidney glomerular endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP