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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
0
primary cell
Biosample term
130
monocyte
88
heart
86
stomach
80
kidney
72
brain
68
lung
66
muscle of arm
63
small intestine
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
CD8-positive, alpha-beta T cell
48
liver
48
thymus
45
right lung
44
islet of Langerhans
41
right kidney
40
B cell
39
renal cortex interstitium
39
renal pelvis
39
retina
38
endothelial cell
36
left kidney
34
spleen
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
31
adipose tissue
31
hepatocyte
31
spinal cord
28
regulatory T cell
25
macrophage
23
T-helper 1 cell
23
body of pancreas
23
fibroblast
23
sigmoid colon
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
pericyte cell
21
T-helper 17 cell
21
caudate nucleus
21
natural killer cell
20
T cell
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pancreas
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
pancreatic ductal cell
19
subcutaneous adipose tissue
18
gastrocnemius medialis
18
heart right ventricle
18
smooth muscle cell
18
substantia nigra
18
thyroid gland
18
transverse colon
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
muscle of trunk
17
osteoblast
17
pancreatic beta cell
17
right atrium auricular region
17
testis
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
keratinocyte
16
layer of hippocampus
16
omental fat pad
16
pancreatic alpha cell
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
endocrine pancreas
15
frontal cortex
15
neutrophil
14
Peyer's patch
14
pancreatic acinar cell
14
pancreatic delta cell
14
prostate gland
14
skeletal muscle myoblast
13
aorta
13
mammary epithelial cell
13
neurosphere
13
putamen
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
breast epithelium
11
erythroblast
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal cortex interstitium
10
angular gyrus
10
chorion membrane
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
esophagus
10
kidney tubule cell
10
left renal pelvis
10
pancreatic stellate cell
10
right renal pelvis
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
epithelial cell of prostate
9
eye
9
lower leg skin
9
naive T cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
thoracic aorta
9
tongue
9
vagina
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
limb
8
mature neutrophil
8
memory B cell
8
mucosa of rectum
8
myoepithelial cell of mammary gland
8
retinal pigment epithelial cell
7
CD1c-positive myeloid dendritic cell
7
amygdala
7
gastroesophageal sphincter
7
globus pallidus
7
hypothalamus
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesenchymal stem cell
7
midbrain
7
muscle layer of duodenum
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
T-cell
6
alternatively activated macrophage
6
anterior cingulate cortex
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dermis lymphatic vessel endothelial cell
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney epithelial cell
6
kidney interstitial cell
6
luminal epithelial cell of mammary gland
6
mesangial cell
6
muscle layer of colon
6
nucleus accumbens
6
plasma cell
6
skeletal muscle fiber
6
superior temporal gyrus
6
type I muscle cell
6
urinary bladder
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
Organ
4
stomach
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
variant allelic effects
assembly!
hg18
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR858ZRU
released
Annotation file set
: Candidate regulatory elements for BSS01284 mucosa of stomach from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR472KMW
released
Annotation file set
: Target gene predictions for BSS01284 mucosa of stomach from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR103IST
released
Annotation file set
: Chromatin states for BSS01284 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896VPB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of stomach
Lab:
AMP-T2D consortium
Project:
AMP