Clear Filters

Annotation type

3018target gene predictions
2638pQTL
1709candidate regulatory elements
1248accessible chromatin
976histone modifications
944chromatin state
816binding sites
685gene expression
484differential activity
180eQTL
variant allelic effects
74Fine-mapped variants
25caQTL
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

5694cis-regulatory elements
3018Target gene links
2937Genetic variant effects
1169Gene expression levels
2Others

Annotation type Category

5246ChIP-seq
4459DNase-seq
2638quantitative proteomics
546RNA-seq
498ATAC-seq
403snATAC-seq
305single cell RNA-seq
189HiC
147scRNA-seq
139H3K27ac ChIP-Seq
84snDropSeq
47pCHi-C
25snRNA-seq
17Expression arrays
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay

Available data

7942bed bed3+
3551tsv
869bed bed9
542bigWig
112txt
40bigBed bed9
34bed bed9+
26csv
12bed bed3
12bed narrowPeak
12bigBed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

12818released
1archived
1revoked

Genome assembly (visualization)

6876hg19
3905GRCh38
4hg18

Organism

12773Homo sapiens

Biosample type

5902tissue
3852primary cell
2553cell line
508in vitro differentiated cells
4stem cell

Biosample term

2636whole blood
135monocyte
108heart
107stomach
94kidney
89endothelial cell
88brain
87fibroblast
86head of caudate nucleus
83muscle of arm
82lung
82placenta
77adrenal gland
76A549
76small intestine
73CD8-positive, alpha-beta T cell
71macrophage
71muscle of leg
70large intestine
69muscle of back
68HeLa-S3
68T-cell
68smooth muscle cell
67left lung
66B cell
66common myeloid progenitor, CD34-positive
64CD4-positive, alpha-beta T cell
59dorsolateral prefrontal cortex
57thymus
56right lung
55hematopoietic multipotent progenitor cell
55stimulated activated CD4-positive, alpha-beta T cell
54H1-hESC
52neural progenitor cell
51natural killer cell
51right kidney
50hepatocyte
50liver
50renal cortex interstitium
49renal pelvis
48K562
48posterior cingulate gyrus
45adipocyte
45left kidney
44islet of Langerhans
43T cell
42heart left ventricle
42retina
41spinal cord
39CD14-positive monocyte
39spleen
37CD4-positive, alpha-beta memory T cell
36cardiac muscle cell
33MCF-7
33activated CD4-positive, alpha-beta T cell
32T-helper 1 cell
32glutamatergic neuron
32keratinocyte
32pericyte
31astrocyte
30adipose tissue
30pancreatic ductal cell
29ovary
28T-helper 17 cell
28heart right ventricle
28pancreas
28regulatory T cell
28trophoblast cell
27body of pancreas
27naive thymus-derived CD4-positive, alpha-beta T cell
26CD8-positive, alpha-beta memory T cell
26T-helper 2 cell
25epithelial cell of proximal tubule
25psoas muscle
25stimulated activated CD8-positive, alpha-beta memory T cell
24dendritic cell
24endothelial cell of lymphatic vessel
24foreskin keratinocyte
24gastrocnemius medialis
24neuron
24pericyte cell
24sigmoid colon
24tibial nerve
23H9
23foreskin fibroblast
23upper lobe of left lung
22EndoC_BH1
22GABAergic neuron
22HCT116
22caudate nucleus
22thyroid gland
21endothelial cell of umbilical vein
21glomerular endothelial cell
21testis
20breast cancer cell
20mesenchymal stem cell
20mononuclear cell
20naive thymus-derived CD8-positive, alpha-beta T cell
20transverse colon
19HFFc6
19HepG2
19coronary artery
19endocardial cell
19omental fat pad
19right atrium auricular region
19subcutaneous adipose tissue
19tibial artery
18embryonic stem cell
18hepatic stellate cell
18muscle of trunk
17Peyer's patch
17ascending aorta
17erythroblast
17fibroblast of lung
17pancreatic beta cell
16GM12878
16cerebellum
16chorionic villus
16endothelial cell of hepatic sinusoid
16fibroblast of cardiac tissue
16frontal cortex
16induced pluripotent stem cell
16pigmented layer of retina
16skeletal muscle satellite cell
16substantia nigra
15activated T-cell
15bronchial epithelial cell
15mammary epithelial cell
15mast cell
15retinal pigment epithelial cell
14activated CD8-positive, alpha-beta memory T cell
14aorta
14endocrine pancreas
14layer of hippocampus
14osteoblast
14pancreatic acinar cell
14pancreatic alpha cell
14pancreatic delta cell
14skeletal muscle myoblast
14skeletal muscle tissue
13breast epithelium
13dermis blood vessel endothelial cell
13excitatory neuron
13fibroblast of dermis
13left renal cortex interstitium
13naive B cell
13prostate gland
13right renal pelvis
12Ammon's horn
12SK-N-DZ
12colonic mucosa
12epithelial cell of prostate
12left renal pelvis
12mammary gland epithelial cell
11IMR-90
11SK-N-SH
11esophagus muscularis mucosa
11glomerular visceral epithelial cell
11neuronal stem cell
11neurosphere
11neutrophil
11progenitor cell of endocrine pancreas
10Rhabdomyosarcoma
10choroid plexus epithelial cell
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10left cardiac atrium
10limb
10lymphoblastoid cell line
10neuroblastoma cell
10putamen
10thoracic aorta
10thyroid follicular cell
922Rv1
9GM06990
9HAP-1
9HT-29
9PC-9
9SK-N-MC
9WERI-Rb-1
9WI38
9cardiomyocytes
9diffuse intrinsic pontine glioma
9esophagus
9eye
9kidney tubule cell
9lower leg skin
9progenitor cell
9temporal lobe
9tongue
8B Cell
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8MM.1S
8NAMALWA cell
8OCI-LY7

Organ

3365blood
2887vasculature
2853bodily fluid
2852blood vessel
2658vein
911epithelium
885brain
740kidney
502connective tissue
478heart
439lung
379musculature of body
355intestine
308pancreas
295skin of body
236limb
236liver
226large intestine
215embryo
174extraembryonic component
159eye
139adipose tissue
138stomach
111muscle organ
106bone element
103mammary gland
101adrenal gland
97placenta
97small intestine
93thymus
93uterus
86prostate gland
84artery
70ureter
64gonad
64penis
63spleen
62lymph node
60__MARKER__
49spinal cord
46esophagus
46thyroid gland
32ovary
31testis
24lymphoid tissue
24skeleton
23nerve
21lymphatic vessel
21mouth
15breast
15bronchus
13bone marrow
13pituitary gland
13urinary bladder
12tongue
12vagina
5trachea
4nose
1embryonic structure
1gallbladder
1pericardium

Life stage

5050adult
1382embryonic
467unknown
454fetal
115child
74newborn
32young adult
30postnatal

Date released

2635February, 2025
2587February, 2021
2511September, 2022
1984July, 2026
389May, 2021
333November, 2021
320May, 2026
317February, 2024
289June, 2020
286September, 2023
128August, 2021
128March, 2020
106January, 2022
98October, 2022
89January, 2020
76May, 2020
70March, 2023
64February, 2020
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
31February, 2023
30March, 2024
19April, 2020
14November, 2019
14October, 2019
9August, 2018
9May, 2019
8April, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
2January, 2025
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2556macs
2386r
1035chromhmm
838encode-ccres
250abc
139qTLtools
116deseq2
36cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
1altius-index
1bedops
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

11327AMP-T2D consortium
497Kyle Gaulton, UCSD
340Bing Ren, UCSD
281KPMP
139Jesse Engreitz, Stanford University
98Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

12106AMP
333ENCODE
281KPMP
59T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank
2499EpiMap
1846ChIP-Atlas
1458ENCODE-rE2G
964ENCODE
533AMP