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Schema
Clear Filters
Annotation type
2638
pQTL
1705
candidate regulatory elements
1356
target gene predictions
976
histone modifications
943
chromatin state
925
accessible chromatin
816
binding sites
685
gene expression
484
differential activity
180
eQTL
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5366
cis-regulatory elements
2937
Genetic variant effects
1356
Target gene links
1169
Gene expression levels
2
Others
Annotation type Category
5240
ChIP-seq
2996
DNase-seq
2638
quantitative proteomics
546
RNA-seq
498
ATAC-seq
403
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
Available data
5953
bed bed3+
3551
tsv
868
bed bed9
542
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
12
bed bed3
12
bed narrowPeak
12
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10828
released
1
archived
1
revoked
Genome assembly (visualization)
6870
hg19
1920
GRCh38
4
hg18
Organism
10783
Homo sapiens
Biosample type
5238
tissue
2783
primary cell
2347
cell line
457
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
90
heart
86
stomach
80
kidney
72
brain
70
endothelial cell
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
B cell
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
52
macrophage
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
45
right lung
45
smooth muscle cell
44
adipocyte
44
islet of Langerhans
44
natural killer cell
43
T cell
43
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
hepatocyte
39
fibroblast
39
renal cortex interstitium
39
renal pelvis
39
retina
36
left kidney
35
spinal cord
34
spleen
33
cardiac muscle cell
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
30
adipose tissue
30
pancreatic ductal cell
28
regulatory T cell
26
MCF-7
24
epithelial cell of proximal tubule
24
pericyte cell
23
T-helper 1 cell
23
body of pancreas
23
neuron
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
dendritic cell
22
foreskin keratinocyte
21
T-helper 17 cell
21
caudate nucleus
21
tibial nerve
21
trophoblast cell
20
breast cancer cell
20
glomerular endothelial cell
20
keratinocyte
20
mononuclear cell
20
ovary
20
pancreas
20
pigmented layer of retina
20
psoas muscle
19
astrocyte
19
endothelial cell of lymphatic vessel
19
foreskin fibroblast
19
mesenchymal stem cell
19
subcutaneous adipose tissue
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
18
pericyte
18
substantia nigra
18
thyroid gland
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
mast cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic beta cell
17
right atrium auricular region
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
pancreatic acinar cell
16
pancreatic alpha cell
16
retinal pigment epithelial cell
16
skeletal muscle satellite cell
16
skeletal muscle tissue
16
tibial artery
15
CD4-positive, alpha-beta T cell
15
GM12878
15
cerebellum
15
endocardial cell
15
hepatic stellate cell
15
neutrophil
15
skeletal muscle myoblast
14
H9
14
ascending aorta
14
endocrine pancreas
14
frontal cortex
14
mammary gland epithelial cell
14
pancreatic delta cell
14
prostate gland
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
putamen
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left renal cortex interstitium
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
choroid plexus epithelial cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
left renal pelvis
9
liposarcoma
9
pancreatic A cell
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skin fibroblast
8
type B pancreatic cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
Organ
2890
vasculature
2853
bodily fluid
2842
blood
2839
blood vessel
2657
vein
920
epithelium
653
kidney
505
connective tissue
467
brain
379
musculature of body
361
heart
310
lung
290
pancreas
286
intestine
236
limb
207
embryo
203
skin of body
183
liver
174
large intestine
146
extraembryonic component
135
adipose tissue
117
stomach
107
eye
89
bone element
86
mammary gland
84
small intestine
83
uterus
79
artery
77
prostate gland
73
placenta
72
adrenal gland
64
penis
62
lymph node
61
ureter
60
__MARKER__
50
gonad
49
thymus
43
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphatic vessel
24
lymphoid tissue
23
nerve
23
ovary
22
thyroid gland
19
mouth
18
skeleton
15
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
5050
adult
1376
embryonic
467
unknown
115
child
74
newborn
61
fetal
32
young adult
30
postnatal
Date released
2635
February, 2025
2584
February, 2021
2508
September, 2022
389
May, 2021
333
November, 2021
320
May, 2026
317
February, 2024
289
June, 2020
286
September, 2023
128
August, 2021
128
March, 2020
106
January, 2022
98
October, 2022
89
January, 2020
76
May, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
31
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2556
macs
2384
r
1034
chromhmm
835
encode-ccres
250
abc
139
qTLtools
116
deseq2
36
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
1
altius-index
1
bedops
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9337
AMP-T2D consortium
497
Kyle Gaulton, UCSD
340
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
10116
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
17
community
5
ITG
Collection Tags