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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
71
brain
20
caudate nucleus
17
substantia nigra
16
layer of hippocampus
13
cerebellum
13
frontal cortex
13
putamen
13
temporal lobe
11
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
pituitary stalk
9
choroid plexus epithelial cell
9
cingulate gyrus
8
SK-N-MC
7
BE(2)-C
7
globus pallidus
7
midbrain
6
Brodmann (1909) area 46
6
Daoy
6
amygdala
6
hypothalamus
6
nucleus accumbens
5
A172
5
M059J
5
anterior cingulate cortex
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
brain microvascular endothelial cell
5
cerebellar cortex
5
medulla oblongata
5
middle frontal gyrus
5
pons
4
H54
4
U-87 MG
4
cerebellum (Hemisphere)
4
inferior parietal cortex
4
medulloblastoma
3
cardiac fibroblast
3
brain pericyte
3
dorsolateral prefrontal cortex
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
prefrontal cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
5
brain
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
January, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
variant allelic effects
month_released!
February, 2020
organ_slims!
nerve
Showing 5 of 5 results
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Download
FileSet
DSR679IUJ
released
Annotation file set
: Candidate regulatory elements for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR228YYU
released
Annotation file set
: Target gene predictions for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718VYK
released
Annotation file set
: Chromatin states for BSS00090 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR967JTX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656EMP
released
Annotation file set
: Accessible chromatin annotation of brain cerebellum astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP