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Schema
Clear Filters
Annotation type
5
accessible chromatin
2
gene expression
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
Annotation type Category
5
snATAC-seq
2
snRNA-seq
Available data
5
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
2636
whole blood
135
monocyte
108
heart
107
stomach
94
kidney
89
endothelial cell
88
brain
87
fibroblast
86
head of caudate nucleus
83
muscle of arm
82
lung
82
placenta
77
adrenal gland
76
A549
76
small intestine
73
CD8-positive, alpha-beta T cell
71
macrophage
71
muscle of leg
70
large intestine
69
muscle of back
68
HeLa-S3
68
T-cell
68
smooth muscle cell
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
64
CD4-positive, alpha-beta T cell
59
dorsolateral prefrontal cortex
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
neural progenitor cell
51
natural killer cell
51
right kidney
50
hepatocyte
50
liver
50
renal cortex interstitium
49
renal pelvis
48
K562
48
posterior cingulate gyrus
45
adipocyte
45
left kidney
44
islet of Langerhans
43
T cell
42
heart left ventricle
42
retina
41
spinal cord
39
CD14-positive monocyte
39
spleen
37
CD4-positive, alpha-beta memory T cell
36
cardiac muscle cell
33
MCF-7
33
activated CD4-positive, alpha-beta T cell
32
T-helper 1 cell
32
glutamatergic neuron
32
keratinocyte
32
pericyte
31
astrocyte
30
adipose tissue
30
pancreatic ductal cell
29
ovary
28
T-helper 17 cell
28
heart right ventricle
28
pancreas
28
regulatory T cell
28
trophoblast cell
27
body of pancreas
27
naive thymus-derived CD4-positive, alpha-beta T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
25
epithelial cell of proximal tubule
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
neuron
24
pericyte cell
24
sigmoid colon
24
tibial nerve
23
H9
23
foreskin fibroblast
23
upper lobe of left lung
22
EndoC_BH1
22
GABAergic neuron
22
HCT116
22
caudate nucleus
22
thyroid gland
21
endothelial cell of umbilical vein
21
glomerular endothelial cell
21
testis
20
breast cancer cell
20
mesenchymal stem cell
20
mononuclear cell
20
naive thymus-derived CD8-positive, alpha-beta T cell
20
transverse colon
19
HFFc6
19
HepG2
19
coronary artery
19
endocardial cell
19
omental fat pad
19
right atrium auricular region
19
subcutaneous adipose tissue
19
tibial artery
18
embryonic stem cell
18
hepatic stellate cell
18
muscle of trunk
17
Peyer's patch
17
ascending aorta
17
erythroblast
17
fibroblast of lung
17
pancreatic beta cell
16
GM12878
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
frontal cortex
16
induced pluripotent stem cell
16
pigmented layer of retina
16
skeletal muscle satellite cell
16
substantia nigra
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
mast cell
15
retinal pigment epithelial cell
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
layer of hippocampus
14
osteoblast
14
pancreatic acinar cell
14
pancreatic alpha cell
14
pancreatic delta cell
14
skeletal muscle myoblast
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
left renal cortex interstitium
13
naive B cell
13
prostate gland
13
right renal pelvis
12
Ammon's horn
12
SK-N-DZ
12
colonic mucosa
12
epithelial cell of prostate
12
left renal pelvis
12
mammary gland epithelial cell
11
IMR-90
11
SK-N-SH
11
esophagus muscularis mucosa
11
glomerular visceral epithelial cell
11
neuronal stem cell
11
neurosphere
11
neutrophil
11
progenitor cell of endocrine pancreas
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
left cardiac atrium
10
limb
10
lymphoblastoid cell line
10
neuroblastoma cell
10
putamen
10
thoracic aorta
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
SK-N-MC
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
kidney tubule cell
9
lower leg skin
9
progenitor cell
9
temporal lobe
9
tongue
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deeptools
2
r
2
samtools
2
umitools
Lab
4
Stephen Parker, UMich
3
Bing Ren, UCSD
Project
4
AMP
3
ENCODE
Collection Tags
4
DGA
3
T2DKP
3
AMP
3
T2DKP
RFA
4
AMP2
3
ENCODE3
annotation_type!
variant allelic effects
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP