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Schema
Citing CMDGA
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Annotation type
2
caQTL
1
accessible chromatin
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
CD4-positive helper T cell
Date released
2
October, 2022
1
February, 2024
Software used
2
matrix-eQTL
1
bedops
1
pepatac
Lab
6694
AMP-T2D consortium
337
Bing Ren, UCSD
276
KPMP
139
Jesse Engreitz, Stanford University
139
Kyle Gaulton, UCSD
65
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
18
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
2
Doug Phanstiel, UNC
Project
3
T1D
RFA
3
T1D
annotation_type!
variant allelic effects
disease_term_name!
acute lymphoblastic leukemia
organ_slims!
lymphatic vessel
Showing 3 of 3 results
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Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D