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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
1
snRNA-seq
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
15
kidney
14
endothelial cell of hepatic sinusoid
10
hepatocyte
9
endothelial cell
5
smooth muscle cell
4
mesenchymal stem cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
2
adipocyte
2
fibroblast
2
glial cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
macrophage
2
neural cell
2
renal principal cell
2
skeletal muscle satellite cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
natural killer cell
1
neuron cell of Hypothalamus (neuron)
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
undifferentiated ESC (H9 cell line)
Organ
2
connective tissue
Date released
2
February, 2024
Software used
1
deeptools
1
macs
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
Project
2
AMP
RFA
22
AMP
2
AMP2
1
ENCODE3
annotation_type!
variant to gene
files.file_type!
bed bed9
organ_slims!
spinal cord
Showing 2 of 2 results
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Download
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP